Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq143 118 8e-22 seq56 91.5 1e-13 seq37 86.0 4e-12 seq21 82.4 5e-11 >seq143 Length=219650 Score = 118 bits (130), Expect = 8e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||||||| ||||| || ||||| || || || |||| |||||||| || | Sbjct 171911 ACCTCCTCTCAACCTTAAAACTAAATGAAGGGTTGATTCCTTTTAGATATTATAGTC-TG 171853 Query 43954 TAATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || | | |||| || |||| ||| |||||||| || | || || || || | | Sbjct 171852 AAAGAGTTCTTCCATCTTCTAATTATTTCCCTGCAAAAATAAGCCTTTACTAATCAGGTG 171793 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 ||| |||||||| ||| ||||||| |||||| ||| || |||| ||||| | Sbjct 171792 GTATTCCTTCTTTGTCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGCTCGA 171733 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| | || |||||||| || ||||| ||||| ||||| |||||||| Sbjct 171732 CATCAAGTGTGATTGTTTTTCCAGTTAAGGTCTTGACAAAAATTTGCAT 171684 >seq56 Length=425007 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 43886 AATCATCAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTA 43945 |||||| | || ||||||||||| || || || || || || ||||||| ||| ||| Sbjct 117023 AATCATTAGCCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTAAATGTTA 116964 Query 43946 TAATCGTTTAATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTG 44004 || || | || || || ||| || |||| ||||||||||| || | | || | Sbjct 116963 TAGTC-TGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTA 116905 Query 44005 GTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGC 44064 || | || | ||||| || ||| ||||||| |||||| ||| || |||| Sbjct 116904 ATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGA 116845 Query 44065 CGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || ||||| | ||||| || || || ||||| || || |||||||||| ||| Sbjct 116844 TGGTTCAACATCAAGAGTAATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 116788 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 43886 AATCATCAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTA 43945 |||||| | || ||||||||||| || || || || || || ||||||| ||| ||| Sbjct 131148 AATCATTAGCCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTAAATGTTA 131089 Query 43946 TAATCGTTTAATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTG 44004 || || | || || || ||| || |||| ||||||||||| || | | || | Sbjct 131088 TAGTC-TGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTA 131030 Query 44005 GTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGC 44064 || | || | ||||| || ||| ||||||| |||||| ||| || |||| Sbjct 131029 ATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGA 130970 Query 44065 CGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || ||||| | ||||| || || || ||||| || || |||||||||| ||| Sbjct 130969 TGGTTCAACATCAAGAGTAATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 130913 Score = 87.8 bits (96), Expect = 1e-12 Identities = 163/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 43886 AATCATCAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTA 43945 |||||| | || ||||||||||| || || || || || || ||||||| ||| ||| Sbjct 127349 AATCATTAGCCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTAAATGTTA 127408 Query 43946 TAATCGTTTAATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTG 44004 || || | || || || ||| || |||| ||||||||||| || | | || | Sbjct 127409 TAGTC-TGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTA 127467 Query 44005 GTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGC 44064 || | || | ||||| || ||| ||||||| |||||| | ||| || |||| Sbjct 127468 ATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACAGCATCAATTGTGTCTGA 127527 Query 44065 CGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || || | || ||||| || || || || ||||| || ||||||| ||| Sbjct 127528 TGGTTCGACGTCAAGAGTGATTGTCTTTCCAGTCAAGGTCTTAACGAATATTTACAT 127584 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||||||| || || || || || || ||||||| ||| ||||| || | Sbjct 127586 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTC-TGA 127644 Query 43955 AATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || || ||| || |||| ||||||||||| || | | || | || | || Sbjct 127645 AAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGG 127704 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| || ||| ||||||| |||||| ||| || |||| || || || Sbjct 127705 GATTCCTTCCTTGTCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAAC 127764 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| | ||||| || || || ||||| || || |||||||||| ||| Sbjct 127765 ATCAAGAGTAATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 127812 >seq37 Length=526299 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||||||| || || || || || || ||||||| ||| ||||| || | Sbjct 195151 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTC-TGA 195093 Query 43955 AATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || || ||| || ||||| ||||||||||| || | | || | || | || Sbjct 195092 AAGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGG 195033 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| || ||| ||||||| |||||| | | || |||| || || || Sbjct 195032 GATTCCTTCCTTGTCTTAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAAC 194973 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTC 44124 ||| | || || || || || ||||| || || |||||||||||||| || Sbjct 194972 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCATTTC 194922 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||||||| || || || || || || ||||||| ||| ||||| || | Sbjct 191458 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTC-TGA 191400 Query 43955 AATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || || ||| || ||||| ||||||||||| || | | || | || | || Sbjct 191399 AAGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGG 191340 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| || ||| ||||||| |||||| | | || |||| || || || Sbjct 191339 GATTCCTTCCTTGTCTTAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAAC 191280 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| | || || || || || ||||| || || |||||||||||||| Sbjct 191279 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 191232 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||||||| || || || || || || ||||||| ||| ||||| || | Sbjct 197467 CCACCTCTCAATCTCAAAACTAAGTGGAGGGTTGATTCTTTTTAAATGTTATAGTC-TGA 197409 Query 43955 AATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || || ||| || ||||| ||||||||||| || | | || | || | || Sbjct 197408 AAGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGG 197349 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| || ||| ||||||| |||||| | | || |||| || || || Sbjct 197348 GATTCCTTCCTTGTCTTAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAAC 197289 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| | || || || || || ||||| || || |||||||||||||| Sbjct 197288 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 197241 >seq21 Length=592296 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| ||||| || || ||||||| || ||||||| |||||| ||||| | Sbjct 450420 ACCACCTCTTAATCTCAAAACTAAATGTAAGGTTGATTCTTTTTAAATATTGTAATC-TG 450362 Query 43954 TAATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || | || ||| || | ||||||||||||||| ||||| | || | || | | Sbjct 450361 AAAGAGTTCTTCCATCTTCTAGTTGTTTTCCTGCAAAAATCAATCTTTATTAATCAGGTG 450302 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||| |||||| |||| || ||| || ||| || |||| ||||| | Sbjct 450301 GGATTCCTTCCTTATCTTAAATCTTAGCTTTAACAGCGTCAATGGTGTCTGATGGCTCTA 450242 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| | || || || || || || | || || ||||| |||| ||| Sbjct 450241 CATCAAGAGTGATGGTCTTTCCCGTCAGGGTTTTAACAAAAATTTACAT 450193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354775252148364