Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq80 352 2e-92 seq75 333 2e-86 >seq80 Length=351589 Score = 352 bits (390), Expect = 2e-92 Identities = 590/843 (70%), Gaps = 19/843 (2%) Strand=Plus/Minus Query 12804 AAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACATAACAGACATTTTTT 12863 |||||||| ||| | || |||||| | ||| | || || |||||| ||||| Sbjct 175365 AAAAATCAGCATCCATAGTAAATACTTTATCTTGTTTTTTACTCATAACTCCAGCTTTTT 175306 Query 12864 GATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCA 12923 ||| || | |||||| |||| || || |||||||| |||| ||| || || | |||| Sbjct 175305 AATAGTCTCCGACTCTTCTTTCGAAGAAATTTGTTTTACCTTATAAGGATATCATATCCA 175246 Query 12924 TAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC---CCTAATTCTAGTAACA 12980 | | || |||||||| || ||| | |||| ||||| ||||| | || | Sbjct 175245 TCCATTCAAAAGGATTCTTTGAA---TTGTATATTTTAGGTGCTCCTAAAGAAAATATTA 175189 Query 12981 ATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 13040 |||| || |||||||| ||||| || | ||||||||||| | | |||||||| ||||||| Sbjct 175188 ATCTATCTGCAACAAATTCTATATATTATTTCATTAAATTAGAATTCATTCCGATTAATT 175129 Query 13041 TTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGAT-AACTATG 13099 || || | |||||| | | ||| | |||||| || ||||| ||| ||| || || Sbjct 175128 CAACTGGTAAAGCTTCACTAATAAATTCTTTTTCAATTTCAACAGCT--GATGAAATAAT 175071 Query 13100 TCTCTTATTACGTTCTCTAATGGAGGATTTGAT-AGATGCTTAAACATCATACATGCAAA 13158 | | | | |||| || | | || || | ||| ||| | | | ||| ||||| Sbjct 175070 TTAATGAATTCGTTGATTACTCAATTTATTAATCATATGTTTATATAGGAGACAAGCAAA 175011 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 |||| ||| | |||||||||||| ||| || || |||||||| || || || ||||| Sbjct 175010 ATCAGTGTGAAGTCCTTCATCTCTTGATATAAGTTCATTTGAAAAGGTAAGTCCAGGCAT 174951 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278 | || |||||| |||||||| || ||| ||| ||||| ||||| || || ||||| Sbjct 174950 TAATGATCTTTTTTTGATCCAAAAAATGGCACAAAATGAACCAGAAAAGAAGATGCCTTC 174891 Query 13279 AACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTT 13338 ||| || ||||| || || || |||||| || | | | ||| | | | |||||||| Sbjct 174890 AACAGCAGCAAAAGCGATTAATCTTTCAGCAAATGAATCATTCTAATTA---ATCCACTT 174834 Query 13339 TCTGGCCCAGTTTGCTTTTTGTT-TAACGCAGTTCATATTTTCTATTGCGTTAAATAAAT 13397 | ||||| ||||||||| || || ||| | ||| || || || | | | || Sbjct 174833 CATTGCCCACATTGCTTTTTTTTGTATAACAGGA-ACATTGTCAATAGCATGTAGAAGAT 174775 Query 13398 AAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAAT 13457 |||||||||| || || || ||||| || ||||| | ||| ||||||||| Sbjct 174774 AATTTTTTTCATTTTCATCAGTTATGTAAGTGTCAATCAAAAGAGAATAAGTTTCTGAAT 174715 Query 13458 GAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTT 13517 | ||||| ||||| ||||||| ||| |||||||||||||| || |||| | ||||||| Sbjct 174714 GTATATTCTCCATAGCTATTTAGAATCCATAAAAACATCTGGCTTCTGGAATTTGAACTT 174655 Query 13518 CGGAGTAAAATCTTTCT--GCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaa 13575 | |||| || || || |||| |||||| || || || || ||||| || ||||| || Sbjct 174654 C--AGTACAAAATTACTAAGCTAGGTTTTCATTTACAATACCATCACTTGCTGCAAAGAA 174597 Query 13576 aGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAA 13635 |||||| | | ||| ||||| | |||||||| | | | | |||| ||||||| || Sbjct 174596 AGCAAGGACATACTTTATAAAATGTTTTTCGTCTGCAGTGAGCTTTTCCCAATCTTTAAG 174537 Query 13636 ATC 13638 ||| Sbjct 174536 ATC 174534 >seq75 Length=370783 Score = 333 bits (368), Expect = 2e-86 Identities = 590/844 (70%), Gaps = 21/844 (2%) Strand=Plus/Plus Query 12804 AAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACATAACAGACATTTTTT 12863 |||||||| ||| | || |||||| | ||| | || || ||| || ||||| Sbjct 196117 AAAAATCAGCATCCATAGTAAATACTTTATCTTATTTTTTACTCATTACTCCAGCTTTTT 196176 Query 12864 GATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCA 12923 || || | |||||| |||| || || || ||||| |||| || || || | |||| Sbjct 196177 AGTAATCTCCTACTCTTCTTTCGAAGAAATTAGTTTTACCTTACAATGATATCATATCCA 196236 Query 12924 TAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTA----CACCCTAATTCTAGTAAC 12979 | | || |||||||| || ||| | |||| ||||| |||| |||| | | || Sbjct 196237 TCCATTCAAAAGGATTCTTTGAA---TTGTATATTTTAGGTGCACC-TAATGCAAATATT 196292 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 | ||| || |||||||| || || || | ||||||||||| | | |||||||| |||||| Sbjct 196293 AGTCTATCTGCAACAAATTCAATATATTATTTCATTAAATTAGAATTCATTCCAATTAAT 196352 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATG 13099 | || || | |||||| ||| ||| | |||||| || |||||||| ||| | ||| Sbjct 196353 TCGACTGGTAAAGCTTCGCTTATAAATTCTTTTTCAATTTCAACTGCG--GATGA-TATA 196409 Query 13100 -TCTCTT-ATTACGTTCTCTAATGGAGG-ATTTGATAGATGCTTAAACATCATACATGCA 13156 | || | | | |||| || | | |||| || || || | | | ||| ||| Sbjct 196410 ATTTCATGAATTCGTTGATTACTCAATTTATTTACTAAGTGTTTGTAAAGAAGACAAGCA 196469 Query 13157 AAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGC 13216 |||||| || | ||||||||||| |||| || |||||||||||||| || ||| Sbjct 196470 AAATCAGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAATGTTAGTCCTGGC 196529 Query 13217 ATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCT 13276 || | || ||||| ||||| ||||| ||| ||| ||||| ||||| || || ||| Sbjct 196530 ATCAATGATCTCTTTTTTATCCAGAATATTGCACAAAATGAACCAGAAAAGAAAATACCT 196589 Query 13277 TCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCAC 13336 |||||||| ||||| || || || |||||| || | | | | ||||| | | ||||| Sbjct 196590 TCAACTGCAGCAAAAGCAATTAATCTTTCAGCAAATG-AGTCATTTTAGTTT--ATCCAT 196646 Query 13337 TTTCTGGCCCAGTTTGCTTTTTGTT-TAACGCAGTTCATATTTTCTATTGCGTTAAATAA 13395 || | ||||| ||||||| | || || ||| || ||| || || || | || | Sbjct 196647 TTCATAGCCCACATTGCTTTCTTTTATATAACAGG-CACATTATCAATAGCATGAAGAAG 196705 Query 13396 ATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTA-TACATTTCTG 13454 ||||||||||| || || |||||||||||| || || ||| | || |||||| Sbjct 196706 GTAATTTTTTTCATTTTCATCAGTAATATAAGTATCAATTAA-AAGTGAGTAAGTTTCTG 196764 Query 13455 AATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAA 13514 | |||||||||||||| ||||||| || |||||||||||||| || |||| || |||| Sbjct 196765 AGTGAATATTTTCCATTGCTATTTAAAATCCATAAAAACATCTTGCTTCTGGAACTTGAA 196824 Query 13515 CTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaa 13574 |||| | | ||| || || || ||||| || || || || ||||| || ||||| | Sbjct 196825 CTTCAGTACAGAATTATTAAGCCAAATTTTCATTCACAATGCCATCACTTGCTGCAAAGA 196884 Query 13575 aaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAA 13634 ||||||| | | ||| ||||| | |||||| | | ||| | ||| ||||||| | Sbjct 196885 AAGCAAGCACATACTTTATAAAGTGTTTTTCATCTGCTGTTAGTTTTTCCCAATCTTTTA 196944 Query 13635 AATC 13638 |||| Sbjct 196945 AATC 196948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430979547839286