Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq29 178 2e-39 seq59 150 2e-31 >seq29 Length=558623 Score = 178 bits (196), Expect = 2e-39 Identities = 401/598 (67%), Gaps = 26/598 (4%) Strand=Plus/Minus Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457 ||||||||| || | || ||||||||||| || |||||| | ||| || ||| | Sbjct 363483 AATTTTGAAAAATTAGGTGTAGGTGGACTTGACAAAGAATTAGCAAATATATTTAGAAGG 363424 Query 164458 GCATTTGCTTCTAGATCAGTTCCTATCGAAATAAT----aaaaaaaTTAGGCTGTAAACA 164513 |||||| | |||||| | |||| || |||| | | | |||| || |||||| Sbjct 363423 GCATTTTCATCTAGAAGA-TTCCCAT---AATAGTTTTTAGAGAAATATGGTATTAAACA 363368 Query 164514 TATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATG 164573 | |||||||| | | | |||| ||||| || || || || ||||| || ||| Sbjct 363367 TGTAAAAGGACTACTCCTGTATGGTCCTCCAGGAACAGGAAAGACTTTAATTGCAAGATA 363308 Query 164574 CATTGCTCAAGCTTTTAAATCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAA 164633 | || || ||| ||| | |||| || || |||||||| |||||| |||| | Sbjct 363307 ATTAGCAAGAGTTTTAAAAGCTAGACCTCCAAAGATAGTTAATGGACCTGAAATATTTAG 363248 Query 164634 CAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGA 164693 |||| || || || |||||| ||| | ||||| || ||| | || ||| | |||| Sbjct 363247 TAAATTCGTTGGAGAAGCAGAAGAGAATATCAGAAAATTATTTGAAGATGCTATAAAAGA 363188 Query 164694 ACAA-AAG--AAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGA 164750 || ||| |||| || | | || |||||||| | || || |||||||| || || Sbjct 363187 TTAAGAAGTTAAAGGAGATGAA---AGCGAATTACATATCATAGTGTTTGATGAAATGGA 363131 Query 164751 TGCTCTTTGCAAAAAACGTGGTGATA-ATATTAT-----------TCATGATGCAGTGGT 164798 ||| | || ||| | | ||| | || || | | ||||| || || Sbjct 363130 TGCAATATGTAAATAGAGAGGTTCTGTATCTTCTGGGGTTGGAGCTTATGATAATGTTGT 363071 Query 164799 TAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAGG 164858 |||||| || | || | |||||||| ||| | | |||||||||||| | || | || Sbjct 363070 TAATCAATTATTATCAATGATAGATGGAGTAAATGCTTTAAATAATATTCTTGTTATTGG 363011 Query 164859 TATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAATT 164918 |||||| || || |||||||||||||| ||| ||||| |||| ||| |||| ||| | Sbjct 363010 TATGACAAATAGAAAAGATTTAATTGATGAAGCTGTATTAAGACCAGGTAGATTTGAAGT 362951 Query 164919 GAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCAT 164976 | | |||||| | ||||| || || ||| || | || |||| ||||| ||||| Sbjct 362950 GCATATAGAAGTTGGATTGCCAGATGAAGCTGGTAGGCTGTAAATATTAAATATTCAT 362893 >seq59 Length=418960 Score = 150 bits (166), Expect = 2e-31 Identities = 510/781 (65%), Gaps = 30/781 (4%) Strand=Plus/Minus Query 6702 ATGAGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAA---TTATC 6758 ||| | |||||| | | |||||||||||| ||| | || ||||| | || |||| Sbjct 375014 ATGTGCATTATACCCAATCAATTCAAAATCATCATAAGTATAATCAAACAATCCCTTATT 374955 Query 6759 AGACtttttttttAATA-TTACAACAGGTGAAGGTTTTATTGATCGAGTTAATTGTTCTT 6817 | |||| |||||| | || || ||| | || || || | | || | ||| Sbjct 374954 AC-CTTTAATTTTAAGAATTGGAAAAGGATATGGGATTCTTTGT------ATTTATCCTT 374902 Query 6818 TTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCAC 6877 ||| ||| | || ||||| ||||||||| | ||| |||| |||||||||||| | Sbjct 374901 TTAAAGCATCTACATGATTACTATAAATATGTGTATCACCTAAAACATGAATAAATTCTC 374842 Query 6878 CTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACAT 6937 || |||| || | | |||| | |||||||||||| |||||| ||| | || Sbjct 374841 CTAAATTCAAATTGCATTCCTTTGCAAGCATATATGTTAATAAGGCATAACTAGCAATAT 374782 Query 6938 TAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACAT--TG--ACAAGATAAA 6993 | || |||| ||||| || | ||| |||||| | ||| ||| || || || | Sbjct 374781 TGAATGGTATTCCTAAACCAAAATCACATGATCTCTAATA-CATCATGCAACTCAATTTA 374723 Query 6994 ATATTGTCTATAGCATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCT 7053 ||| ||| || |||||| ||| ||||||||| || || || | || | | Sbjct 374722 CCATTTGCTA---CAAAAAATTACGACATTACATGACAAGGTGGCAATGCCATCTATTTT 374666 Query 7054 ATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAAT 7113 | ||| ||||||||||| | || || ||| | |||| ||||||||| |||| | | Sbjct 374665 AAATCGCTAGGATTCCAAGCCGACAATATAATTCTTCTACTATTTGGATTATTTTTAAGT 374606 Query 7114 TTTGTTATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTT 7173 | | |||| || || || ||| | || | | | ||||| | | | ||||| Sbjct 374605 TATTAAATAACATCTTTTACTTAATCCACTCCTTAATTATTATAATCACTTTAACAATCC 374546 Query 7174 ATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCT 7233 |||| || || |||||||||||||||| ||| ||||| | || || |||||| || Sbjct 374545 TTATATTTGGCACCAAAATGTCTCCATTAAAATCCATATACTGGTCCCAAATCATGCTCC 374486 Query 7234 TCACGATGATTAAATCCTAATCGATTTAAATTAGATTTTGATCCATAAGCATCCCAAATA 7293 | | | || ||||| | | ||| |||| | ||| ||||| | |||| ||| Sbjct 374485 TATCTCTCTTTTAATCCAATACTATTCAAATAGTCTCTTGTTCCATTTCCTTCCC--ATA 374428 Query 7294 TGTACAGAttttttt--GATAA--ATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAA 7349 | | | || || | |||| |||| | | |||| ||||| | ||||| || Sbjct 374427 TCTTAATCTTCTTATCCAATAATTATTTTCCG--TCTGTATTGCCTTTTAAAAACCACAA 374370 Query 7350 AAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAATG-TAC 7408 | || ||||| | |||||| | || | | ||||||| || |||||||| || | | | Sbjct 374369 TAACTCCTCTACAACTCCACGAAAGAATACTTTTTTTGTTGTTAATAAAGGAAAAGATTC 374310 Query 7409 T--TAAATCATATCTATTCTGTAAACCAAATACTGAAAGAGTACCTGTTCCAGTTCTATC 7466 | |||| | |||| | | | ||||||| ||| | || || |||||||||||| Sbjct 374309 TGCCAAATTAAATCTCATGGTTTATCCAAATATTGATATTGTTCCCACTCCAGTTCTATC 374250 Query 7467 A 7467 | Sbjct 374249 A 374249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595867955518800