Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq28 125 6e-24 seq143 109 5e-19 seq56 93.3 4e-14 >seq28 Length=561789 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | || ||| || || || | ||| ||||| |||| | ||||||||| Sbjct 90771 CCTCCTCTGAGTCTCAATACTAAATGGAGAGTTGATTCTTTTTAGATGTTATAATCTGAA 90830 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||| || ||||| |||| || ||||||| | ||| || || Sbjct 90831 AGAGTTCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTTTATTAATCAGGTGGG 90890 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||||||||| ||||| |||||||| || || ||| ||| |||| | || || Sbjct 90891 ATTCCTTCTTTGTCTTAAATCTTTGCCTTAACAGCATCGATAGTATCAGATGGCTCAACA 90950 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || || ||||| || || ||||| || | ||| Sbjct 90951 TCAAGTGTGATGGTCTTCCCTGTAAGGGTCTTAACAAAAATTTACAT 90997 >seq143 Length=219650 Score = 109 bits (120), Expect = 5e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||||| | || || || || | || |||||||||| | |||| Sbjct 171918 TTTTCATACCTCCTCTCAACCTTAAAACTAAATGAAGGGTTGATTCCTTTTAGATATTAT 171859 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | ||| | ||| || | | ||| || |||| || | |||| || || Sbjct 171858 AGTCTGAAAGAGTTCTTCCATCTTCTAATTATTTCCCTGCAAAAATAAGCCTTTACTAAT 171799 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || || ||||||||||| |||||||| || ||||| ||| | | ||||| | Sbjct 171798 CAGGTGGTATTCCTTCTTTGTCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATG 171739 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| |||| ||||| ||||||||||| | || || ||||| || ||||| Sbjct 171738 GCTCGACATCAAGTGTGATTGTTTTTCCAGTTAAGGTCTTGACAAAAATTTGCAT 171684 >seq56 Length=425007 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| |||| || || ||||| | || ||||| |||| | |||||| || | Sbjct 240997 CCGCCTCTTAATCTTAAGACTAAGTGAAGTGTTGATTCTTTTTAAATGTTATAGTC--TG 240940 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | |||||| ||| || | | ||||| | || || | ||||| | ||| || | Sbjct 240939 AAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCGAAAATGAGTCTTTATTAATCAGGTG 240880 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||| ||||| |||||||| || ||||| || | | ||||| | | |||| Sbjct 240879 GGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACAGCATCAATTGTGTCTGATGGTTCGA 240820 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| ||||| ||||||||||| | || || || || || | ||| Sbjct 240819 CGTCAAGAGTGATTGTTTTTCCAGTCAATGTCTTAACGAAAATTTACAT 240771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448288157223480