Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25]
543 sequences; 68,016,588 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq28 125 6e-24
seq143 109 5e-19
seq56 93.3 4e-14
>seq28
Length=561789
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|||||||| | || ||| || || || | ||| ||||| |||| | |||||||||
Sbjct 90771 CCTCCTCTGAGTCTCAATACTAAATGGAGAGTTGATTCTTTTTAGATGTTATAATCTGAA 90830
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | ||| |||| || ||||| |||| || ||||||| | ||| || ||
Sbjct 90831 AGAGTTCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTTTATTAATCAGGTGGG 90890
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| ||||||||||| ||||| |||||||| || || ||| ||| |||| | || ||
Sbjct 90891 ATTCCTTCTTTGTCTTAAATCTTTGCCTTAACAGCATCGATAGTATCAGATGGCTCAACA 90950
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| |||||||| || || ||||| || || ||||| || | |||
Sbjct 90951 TCAAGTGTGATGGTCTTCCCTGTAAGGGTCTTAACAAAAATTTACAT 90997
>seq143
Length=219650
Score = 109 bits (120), Expect = 5e-19
Identities = 165/235 (70%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832
||| || ||||||||||| | || || || || | || |||||||||| | ||||
Sbjct 171918 TTTTCATACCTCCTCTCAACCTTAAAACTAAATGAAGGGTTGATTCCTTTTAGATATTAT 171859
Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892
| || | ||| | ||| || | | ||| || |||| || | |||| || ||
Sbjct 171858 AGTCTGAAAGAGTTCTTCCATCTTCTAATTATTTCCCTGCAAAAATAAGCCTTTACTAAT 171799
Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952
| || || || ||||||||||| |||||||| || ||||| ||| | | ||||| |
Sbjct 171798 CAGGTGGTATTCCTTCTTTGTCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATG 171739
Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| ||||| |||| ||||| ||||||||||| | || || ||||| || |||||
Sbjct 171738 GCTCGACATCAAGTGTGATTGTTTTTCCAGTTAAGGTCTTGACAAAAATTTGCAT 171684
>seq56
Length=425007
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||| |||| || || ||||| | || ||||| |||| | |||||| || |
Sbjct 240997 CCGCCTCTTAATCTTAAGACTAAGTGAAGTGTTGATTCTTTTTAAATGTTATAGTC--TG 240940
Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898
| |||||| ||| || | | ||||| | || || | ||||| | ||| || |
Sbjct 240939 AAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCGAAAATGAGTCTTTATTAATCAGGTG 240880
Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958
| || ||||| ||||| |||||||| || ||||| || | | ||||| | | ||||
Sbjct 240879 GGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACAGCATCAATTGTGTCTGATGGTTCGA 240820
Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||||| ||||| ||||||||||| | || || || || || | |||
Sbjct 240819 CGTCAAGAGTGATTGTTTTTCCAGTCAATGTCTTAACGAAAATTTACAT 240771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448288157223480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |