Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq75 381 6e-101 seq80 352 3e-92 >seq75 Length=370783 Score = 381 bits (422), Expect = 6e-101 Identities = 670/979 (68%), Gaps = 43/979 (4%) Strand=Plus/Plus Query 21121 ATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCC 21180 ||| | | ||||||||||||| | | || || ||||||| |||||| ||| | ||| Sbjct 196109 ATTGAATCAAAAATCAGCATCCATAGTAAATACTTTATCTTATTTTTTACTCATTACTCC 196168 Query 21181 CATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATAT 21240 ||||| ||||| | |||||| ||||||| ||||| || || |||| ||||||||| Sbjct 196169 AGCTTTTTAGTAATCTCCTACTCTTCTTTCGAAGAAATTAGTTTTACCTTACAATGATAT 196228 Query 21241 AGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGA 21300 ||||| | ||||| ||||| | || || |||||||| ||| | | | | Sbjct 196229 CATATCCATCCATTCAAAAGGATTCTTTGAATTGTATATTTTAGGTGCACCTAATGCAAA 196288 Query 21301 TAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360 || || ||||||||| |||||||| ||||||| |||||| | | ||||||| || || Sbjct 196289 TATTAGTCTATCTGCAACAAATTCAATATATTATTTCATTAAATTAGAATTCATTCCAAT 196348 Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCT--TCA-AC 21417 |||| || || | ||||| | | ||| |||||| || || || | | | Sbjct 196349 TAATTCGACTGGTAAAGCTTCGCTTATAAATTCTTTTTCAATTTCAACTGCGGATGATAT 196408 Query 21418 AATTATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACA 21477 |||| || ||| | | ||| |||| || | ||| ||||| | | | ||| Sbjct 196409 AATTTCATGAATT--CGTTGAT-TACTCAATTTATTTACTAAGTGTTTGTAAAGAAGACA 196465 Query 21478 TGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC 21537 ||||||||| ||| | ||||||||| || ||||||||||| |||||||||| || Sbjct 196466 AGCAAAATCAGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAATGTTAGTCC 196525 Query 21538 GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAAT 21597 ||||| ||| ||||||||||| ||| ||||||| ||||| || ||||||||||| Sbjct 196526 TGGCATCAATGATCTCTTTTTTATCCAGAATATTGCACAAAATGAACCAGAAAAGAAAAT 196585 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATAT 21657 || ||||| |||||||| |||| ||||| |||| | || || || || | ||| Sbjct 196586 ACCTTCAACTGCAGCAAAAGCAATTAATCTTTCAGCAAAT---GAGTCATTTTAGTTTAT 196642 Query 21658 CCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCA---ATTGTATCAATAGCTTT 21714 |||||| ||||| |||| ||||||| ||| || || | |||||||||| | Sbjct 196643 CCATTTCATAGCCCACATTGC--TTTCTTTTATATAA-CAGGCACATTATCAATAGCATG 196699 Query 21715 TAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774 | ||| | ||||||||||| | |||| || || || | Sbjct 196700 AAGAAGGTAATTTTTTTCATTTTCATCAGTAATATAAGTATCAATTAAAAGTGAGTAAGT 196759 Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834 ||| || || |||||||| || ||||| | |||||| |||||||||||||| |||| | Sbjct 196760 TTCTGAGTGAATATTTTCCATTGCTATTTAAAATCCATAAAAACATCTTGCTTCTGGAAC 196819 Query 21835 TTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGC 21894 |||||| || | | | ||| || |||||| |||||||| || || |||||||| || || Sbjct 196820 TTGAACTTCAGTACAGAATTATTAAGCCAAATTTTCATTCACAATGCCATCACTTGCTGC 196879 Query 21895 AAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATC 21954 ||| || || | | || |||||||| | | ||| | |||||| ||||| |||||| Sbjct 196880 AAAGAAAGCAAGCACATACTTTATAAAGTGTTTTTCATCTGCTGTTAGTTTTTCCCAATC 196939 Query 21955 TAATAAATCTT----TTGAT------------------------AAATCTACTTCTTCAG 21986 | |||||| | || || ||||||| ||||||| Sbjct 196940 TTTTAAATCCTAAAATTTATTAATTTACATATAATACCTAATACAAATCTATCTCTTCAG 196999 Query 21987 TTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTG 22046 ||||||||| || || || | |||||||||| |||| |||||||||||| |||| | Sbjct 197000 CTGTCCAAAAACTTGCTTTATGTTATTTATACATATTCCAAATATCATTATATTTTATAG 197059 Query 22047 GAAATATTACAAACCTGTT 22065 |||| | |||||| || || Sbjct 197060 GAAACAATACAAATCTATT 197078 >seq80 Length=351589 Score = 352 bits (390), Expect = 3e-92 Identities = 661/969 (68%), Gaps = 40/969 (4%) Strand=Plus/Minus Query 21129 AAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTTT 21188 ||||||||||||| | | || || ||||||| |||||| ||||| ||| ||||| Sbjct 175365 AAAAATCAGCATCCATAGTAAATACTTTATCTTGTTTTTTACTCATAACTCCAGCTTTTT 175306 Query 21189 GATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCA 21248 ||| || | |||||| ||||||| |||||||| || |||| || ||||| |||| Sbjct 175305 AATAGTCTCCGACTCTTCTTTCGAAGAAATTTGTTTTACCTTATAAGGATATCATATCCA 175246 Query 21249 TAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAATC 21308 | | ||||| ||||| | || || |||||||| || | ||| ||||| Sbjct 175245 TCCATTCAAAAGGATTCTTTGAATTGTATATTTTAGGTGCTCCTAAAGAAAATATTAATC 175186 Query 21309 TATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTA 21368 ||||||| |||||||||||||||| |||||| | | ||||||| ||||| |||| | Sbjct 175185 TATCTGCAACAAATTCTATATATTATTTCATTAAATTAGAATTCATTCCGATTAATTCAA 175126 Query 21369 CAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCT--TCAACAATTATATT 21426 | || | ||||| | | ||| |||||| || || ||| | || | | || | Sbjct 175125 CTGGTAAAGCTTCACTAATAAATTCTTTTTCAATTTCAACAGCTGATGAAATAATTTAAT 175066 Query 21427 TATTATCCTAGATGTACTAGGGGGATACAATAAT-TGTTTAAACATCAAACATGCAAAAT 21485 | | || | ||| |||| || ||| || |||||| | | | ||| ||||||| Sbjct 175065 GAAT-TCGTTGAT-TACTCAATTTAT-TAATCATATGTTTATATAGGAGACAAGCAAAAT 175009 Query 21486 CACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTA 21545 || || | |||||||| || ||| | |||||| ||||| || | || ||||||| Sbjct 175008 CAGTGTGAAGTCCTTCATCTCTTGATATAAGTTCATTTGAAAAGGTAAGTCCAGGCATTA 174949 Query 21546 ATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAA 21605 || ||| ||||| | |||||| || | ||||| || |||||||| ||||| |||| Sbjct 174948 ATGATCTTTTTTTGATCCAAAAAATGGCACAAAATGAACCAGAAAAGAAGATGCCTTCAA 174889 Query 21606 CGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAAT--ATCCATTT 21663 | |||||||| || | ||||| |||| | || || || | || ||| ||||| || Sbjct 174888 CAGCAGCAAAAGCGATTAATCTTTCAGCAAAT---GAATCAT--TCTAATTAATCCACTT 174834 Query 21664 TTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATG 21723 |||||| |||| |||| || ||| | || | |||||||| | || ||||| Sbjct 174833 CATTGCCCACATTGCTTTTTTTTGTATAACAGGAACATTGTCAATAGCATGTAGAAGATA 174774 Query 21724 AtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATG 21783 ||||||||||| | |||| |||||| | ||| |||| ||||| Sbjct 174773 ATTTTTTTCATTTTCATCAGTTATGTAAGTGTCAATCAAAAGAGAATAAGTTTCTGAATG 174714 Query 21784 TATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTC 21843 |||||| || || ||||| | ||||| ||||||||||| || |||| | |||||| || Sbjct 174713 TATATTCTCCATAGCTATTTAGAATCCATAAAAACATCTGGCTTCTGGAATTTGAACTTC 174654 Query 21844 GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGC 21903 | | ||||| | ||| | |||||||||||| || |||||||| || ||||| || || Sbjct 174653 AGTACAAAATTACTAAGCTAGGTTTTCATTTACAATACCATCACTTGCTGCAAAGAAAGC 174594 Query 21904 CAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATC--TAA---- 21957 | | || |||||||||| | ||||| | || | |||| |||||| ||| Sbjct 174593 AAGGACATACTTTATAAAATGTTTTTCGTCTGCAGTGAGCTTTTCCCAATCTTTAAGATC 174534 Query 21958 -TAAA----TCTTTTGATAAAT-CTAC---------------TTCTTCAGTTGTCCAAAA 21996 |||| | || | |||||| |||| ||||||| ||||||||| Sbjct 174533 CTAAAATTTTATTATTATAAATACTACCTAATATAAATCGATCTCTTCAGCTGTCCAAAA 174474 Query 21997 GCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTAC 22056 ||| || | || |||||||||| ||||||| ||||| ||| | ||||| || | || Sbjct 174473 GCTTGCTTTGTGCTATTTATACATATTCCAGATGTCATTGTATTTGATTGGGAAGAGAAC 174414 Query 22057 AAACCTGTT 22065 ||| || || Sbjct 174413 AAATCTATT 174405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531897189723320