Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq75 268 2e-66 seq80 259 1e-63 >seq75 Length=370783 Score = 268 bits (296), Expect = 2e-66 Identities = 544/796 (68%), Gaps = 29/796 (4%) Strand=Plus/Minus Query 22168 GATTGGCCAAAACTTACAGAAAACGAACAACATTTTATCAAATATATTCTAGCATTCTTT 22227 |||||| |||||| |||| | | ||| |||| ||||| || ||| | || || |||||| Sbjct 196939 GATTGGGAAAAACTAACAGCAGATGAAAAACACTTTATAAAGTATGTGCTTGCTTTCTTT 196880 Query 22228 GCTACCGCAGACGGTATAGTTTTTGAGAATCTAG-TGACTAATTTTGCATCTGAAATTCA 22286 || | || || || || ||| ||| | | | | ||||| || | ||||| |||| Sbjct 196879 GCAGCAAGTGATGGCATTGTGAATGAAAATTTGGCTTAATAATTCTGTA-CTGAAGTTCA 196821 Query 22287 ATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCACGCGGA 22346 | ||||| || |||||||| ||||| | |||| || |||||| ||||| | || Sbjct 196820 AGTTCCAGAAGCAAGATGTTTTTATGGATTTTAAATAGCAATGGAAAATATTCACTCAGA 196761 Query 22347 AACATATTC-----TA--TGATGCTACAGTCACTCGTAGAAGATAAAGACGAACAACGAA 22399 ||| || || || |||| || | ||| || || || || || || | Sbjct 196760 AACTTACTCACTTTTAATTGATACTTATATTACT----GATGAAAATGA--AAAAAATTA 196707 Query 22400 ACTTATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGA 22459 ||| ||| || ||| | | | || | || || ||| ||||| ||| Sbjct 196706 CCTTCTTCAT-GCTATTGATAATGTGCCTGTTATATAAAAGAAAGCAATGTGGGCTATGA 196648 Query 22460 AATGGATGAAC---AATGAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTG 22516 ||||||| ||| ||||| ||||| || ||| | | ||||| ||||||| |||| Sbjct 196647 AATGGATAAACTAAAATGAC---TCATTTGCTGAAAGATTAATTGCTTTTGCTGCAGTTG 196591 Query 22517 AAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTA 22576 |||| |||||||||||||| ||||||||||||| || ||| ||||||| | || | | Sbjct 196590 AAGGTATTTTCTTTTCTGGTTCATTTTGTGCAATATTCTGGATAAAAAAGAGATCATTGA 196531 Query 22577 TGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATT 22636 |||| || ||||| ||||||||||| |||||| ||||||| ||||||||||| |||| Sbjct 196530 TGCCAGGACTAACATTTTCAAATGAATTAATTTCAAGAGATGAAGGTCTTCATACTGATT 196471 Query 22637 TTGCGTGTATGCTATATCGGAATCATATCATTCATAAACTTCCATATGAAACTGTACTTG 22696 |||| ||| | || || || || | | ||||| | || || | | || Sbjct 196470 TTGCTTGTCTTCTTTA---CAAACACTTAGTAAATAAATTGAGTAATCAACGAATTCATG 196414 Query 22697 ATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAA 22756 | ||||| || ||||||||| ||||| |||||| |||| || |||||||| Sbjct 196413 AAATTATATCATCCGCAGTTGAAATTGAAAAAGAATTTATAAGCGAAGCTTTACCAGTCG 196354 Query 22757 GTCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTC 22816 | ||||| || ||| | | | ||||| ||||||| |||||||||||||| | | Sbjct 196353 AATTAATTGGAATGAATTCTAATTTAATGAAATAATATATTGAATTTGTTGCAGATAGAC 196294 Query 22817 TATTAATTTCACTCGGTTATGCAAAGCATTATA-ACGTC-GTTAATCCATTTGAATGGAT 22874 || || || || | ||| | || | |||| | || ||||| ||||||||||| Sbjct 196293 TAATATTTGCATTAGGTGCACCTAA--AATATACAATTCAAAGAATCCTTTTGAATGGAT 196236 Query 22875 GGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCA 22934 ||| | || ||| | |||| || || ||||||||||||| |||||| || || ||| | Sbjct 196235 GGATATGATATCATTGTAAGGTAAAACTAATTTCTTCGAAAGAAGAGTAGGAGATTACTA 196176 Query 22935 AAAAGCAGGTGTTATG 22950 |||||| || || ||| Sbjct 196175 AAAAGCTGGAGTAATG 196160 >seq80 Length=351589 Score = 259 bits (286), Expect = 1e-63 Identities = 540/791 (68%), Gaps = 19/791 (2%) Strand=Plus/Plus Query 22168 GATTGGCCAAAACTTACAGAAAACGAACAACATTTTATCAAATATATTCTAGCATTCTTT 22227 |||||| ||| || || | | ||||| |||||||||| || ||| | || || |||||| Sbjct 174543 GATTGGGAAAAGCTCACTGCAGACGAAAAACATTTTATAAAGTATGTCCTTGCTTTCTTT 174602 Query 22228 GCTACCGCAGACGGTATAGTTTTTGAGAATCTAG-TGACTAATTTTGCATCTGAAATTCA 22286 || | || ||||| || ||| || |||| | | |||||||| | ||||| |||| Sbjct 174603 GCAGCAAGTGATGGTATTGTAAATGAAAACCTAGCTTAGTAATTTTGTA-CTGAAGTTCA 174661 Query 22287 ATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCACGCGGA 22346 | ||||| ||||||||||| ||||| | |||| || || ||| | || | || Sbjct 174662 AATTCCAGAAGCCAGATGTTTTTATGGATTCTAAATAGCTATGGAGAATATACATTCAGA 174721 Query 22347 AACATATTCTATGATGCTACAGTCACTCGTAGAA--GATAAAGACGAACAACGAAACTTA 22404 ||| |||||| | || | | |||| | || ||| || | ||| || || | Sbjct 174722 AACTTATTCTCTTTTGATTGA--CACTTACATAACTGATGAAAATGAAAAA--AATTATC 174777 Query 22405 TTCCGC--GCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAAT 22462 ||| | || ||| || ||| || | || || ||| ||||| |||| | Sbjct 174778 TTCTACATGCTATTGACAATGTTCCTGTTATACAAAAAAAAGCAATGTGGGCAATGAAGT 174837 Query 22463 GGATGAACAATGAACG-TTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGC 22521 |||| || | ||| | |||||| || ||| | | || || ||||||| ||||||||| Sbjct 174838 GGATTAATTA-GAATGATTCATTTGCTGAAAGATTAATCGCTTTTGCTGCTGTTGAAGGC 174896 Query 22522 ATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCG 22581 || ||||||||||| |||||||||| || |||||| | |||||| | || | ||||| Sbjct 174897 ATCTTCTTTTCTGGTTCATTTTGTGCCATTTTTTGGATCAAAAAAAGATCATTAATGCCT 174956 Query 22582 GGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCG 22641 || || || ||||||||||| | || ||||||| || ||||| || |||||||| Sbjct 174957 GGACTTACCTTTTCAAATGAACTTATATCAAGAGATGAAGGACTTCACACTGATTTTGCT 175016 Query 22642 TGTATGCTATATCGGAATCATATCATTCATAAACTTCCATATGAAACTGTACTTGATATT 22701 ||| | |||||| || ||||| ||| ||||| | || || | | | | ||| Sbjct 175017 TGTCTCCTATAT---AAACATATGATTAATAAATTGAGTAATCAACGAATTCATTAAATT 175073 Query 22702 ATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTC 22761 ||| || || |||||| ||||| ||||||| | || || |||||||| | Sbjct 175074 ATTTCATCAGCTGTTGAAATTGAAAAAGAATTTATTAGTGAAGCTTTACCAGTTGAATTA 175133 Query 22762 ATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTA 22821 || || || ||| | | | ||||| |||||| |||||||||||||| | || || Sbjct 175134 ATCGGAATGAATTCTAATTTAATGAAATAATATATAGAATTTGTTGCAGATAGATTAATA 175193 Query 22822 ATTTCACTCGGTTATGCAAAGCATTATA-ACGTC-GTTAATCCATTTGAATGGATGGAAC 22879 |||| | || | || | |||| | || ||||| |||||||||||||| Sbjct 175194 TTTTCTTTAGGAGCACCTAA--AATATACAATTCAAAGAATCCTTTTGAATGGATGGATA 175251 Query 22880 TTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAG 22939 | || || | |||| || || ||||||||||||| |||||| || || || |||||| Sbjct 175252 TGATATCCTTATAAGGTAAAACAAATTTCTTCGAAAGAAGAGTCGGAGACTATTAAAAAG 175311 Query 22940 CAGGTGTTATG 22950 | || |||||| Sbjct 175312 CTGGAGTTATG 175322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303344532324626