Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq37 86.0 4e-12 seq56 84.2 1e-11 seq23 84.2 1e-11 seq236 82.4 5e-11 >seq37 Length=526299 Score = 86.0 bits (94), Expect = 4e-12 Identities = 163/236 (69%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | ||| || || || ||||| || |||| ||| || || | Sbjct 191462 CATT-CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGT 191404 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | || |||||||| ||||| ||||| || || | || || ||| | Sbjct 191403 CTGAAAGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAG 191344 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGC-TTCACATTCTGGACAGTATCTCCACTT 38264 |||| ||||| |||| | ||| |||| || || ||| | || || ||| | Sbjct 191343 GTGGGATTCCTTCCTTGT-CTTAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGT 191285 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||||| || | || ||||| || || || || ||||| || ||||| ||||| || Sbjct 191284 TCAACATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCATTTT 191229 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | ||| || || || ||||| || |||| ||| || || | Sbjct 195155 CATT-CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGT 195097 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | || |||||||| ||||| ||||| || || | || || ||| | Sbjct 195096 CTGAAAGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAG 195037 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGC-TTCACATTCTGGACAGTATCTCCACTT 38264 |||| ||||| |||| | ||| |||| || || ||| | || || ||| | Sbjct 195036 GTGGGATTCCTTCCTTGT-CTTAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGT 194978 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || | || ||||| || || || || ||||| || ||||| ||||| Sbjct 194977 TCAACATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 194925 Score = 82.4 bits (90), Expect = 5e-11 Identities = 162/236 (69%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | ||| || || || || || || |||| ||| || || | Sbjct 197471 CATT-CCACCTCTCAATCTCAAAACTAAGTGGAGGGTTGATTCTTTTTAAATGTTATAGT 197413 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | || |||||||| ||||| ||||| || || | || || ||| | Sbjct 197412 CTGAAAGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAG 197353 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGC-TTCACATTCTGGACAGTATCTCCACTT 38264 |||| ||||| |||| | ||| |||| || || ||| | || || ||| | Sbjct 197352 GTGGGATTCCTTCCTTGT-CTTAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGT 197294 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||||| || | || ||||| || || || || ||||| || ||||| ||||| || Sbjct 197293 TCAACATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCATTTT 197238 >seq56 Length=425007 Score = 84.2 bits (92), Expect = 1e-11 Identities = 163/237 (69%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 38083 AATCATTA-CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTG 38141 |||||||| ||||||||||| | ||| || || || ||||| || |||| ||| || Sbjct 117023 AATCATTAGCCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTAAATGTTA 116964 Query 38142 TAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGA 38201 || || || | | | | || ||||||| ||||| ||||| || || | || || | Sbjct 116963 TAGTCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAA 116904 Query 38202 TCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC-TTCACATTCTGGACAGTATCTCC 38260 || | |||| ||||| |||| | ||| |||| || || ||| | | || ||| Sbjct 116903 TCAGGTGGGATTCCTTCCTTGT-CTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGA 116845 Query 38261 ACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| || | |||||||| || || || || ||||| || ||||| | ||| Sbjct 116844 TGGTTCAACATCAAGAGTAATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 116788 Score = 84.2 bits (92), Expect = 1e-11 Identities = 163/237 (69%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 38083 AATCATTA-CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTG 38141 |||||||| ||||||||||| | ||| || || || ||||| || |||| ||| || Sbjct 131148 AATCATTAGCCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTAAATGTTA 131089 Query 38142 TAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGA 38201 || || || | | | | || ||||||| ||||| ||||| || || | || || | Sbjct 131088 TAGTCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAA 131029 Query 38202 TCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC-TTCACATTCTGGACAGTATCTCC 38260 || | |||| ||||| |||| | ||| |||| || || ||| | | || ||| Sbjct 131028 TCAGGTGGGATTCCTTCCTTGT-CTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGA 130970 Query 38261 ACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| || | |||||||| || || || || ||||| || ||||| | ||| Sbjct 130969 TGGTTCAACATCAAGAGTAATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 130913 >seq23 Length=588601 Score = 84.2 bits (92), Expect = 1e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 38083 AATCATTA-CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTG 38141 |||||||| ||||||||||| | ||| || || ||||| || ||||||| ||||| Sbjct 77140 AATCATTAGCCACCTCTCAATCTCAAGACTAAGTGAAGTGTTGATTCCTTTTAGATATTA 77081 Query 38142 TAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGA 38201 || || || | | | |||| ||||||| |||||| ||||| || || | || || | Sbjct 77080 TAGTCTGAGAGTGTTCTTCCGTCTTCTAATTATTTTCCTGCAAAGATAAGTCTTTATTAA 77021 Query 38202 TCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTT 38239 |||| |||| ||||| |||| | || |||| |||| Sbjct 77020 TCGGGTGGGATTCCTTCCTTGT-CTTAGATTTTAGCTT 76984 >seq236 Length=1941 Score = 82.4 bits (90), Expect = 5e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||| | | | |||||||||| ||||||||||||||||| || | ||||||||||| || Sbjct 638 CTCTGTCCGAGGTTCTTTTCACCTTTCCCTCACGGTACTGGTCCACTATCGGTCTCTCGA 579 Query 20009 TAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 578 GAGTATTTAGCCTTA 564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334944983382233