Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq80 208 8e-49 >seq80 Length=351589 Score = 208 bits (230), Expect = 8e-49 Identities = 548/829 (66%), Gaps = 12/829 (1%) Strand=Plus/Minus Query 92746 AAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACATTTT 92805 ||||| ||||| | |||||||| || || || || ||| ||||||| ||| |||| Sbjct 175363 AAATCAGCATCCATAGTAAATACTTTATCTTGT---TTTTTACTCATAACTCCAGCTTTT 175307 Query 92806 TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTC 92865 | || || || ||| || |||| ||||||||||| || |||| || |||||| || | Sbjct 175306 TAATAGTCTCCGACTCTTCTTTCGAAGAAATTTGTTTTACCTTATAAGGATATCATATCC 175247 Query 92866 A-CTAGTGATT-GGATTCTTGGCGTTATAATACTTTTCACCGATC--AACTCGTACAATA 92921 | | | | | |||||||| | || || || |||| | || || | | || Sbjct 175246 ATCCATTCAAAAGGATTCTTTGAATTGTA-TA-TTTTAGGTGCTCCTAAAGAAAATATTA 175189 Query 92922 ATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGAC 92981 ||||||| || ||||||||||| || | ||| |||| | |||||||||| | | Sbjct 175188 ATCTATCTGCAACAAATTCTATATATTATTTCATTAAATTAGAATTCATTCCGATTAATT 175129 Query 92982 GTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTT 93041 || |||| ||| || | | || ||||| || ||| |||| ||| | | |||| Sbjct 175128 CAACTGGTAAAGCTTCACTAATAAATTCTTTTTCAATTTCAACAGCTGATGAAATAATTT 175069 Query 93042 CTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGT 93101 | || ||| ||| | | | || || || | | || ||||| | Sbjct 175068 AATGAATTCGTTGATTACTCAATTTATTAATCATATGTTTATATAGGAGACAAGCAAAAT 175009 Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161 | || || | ||||| |||| |||||| | ||||| || || | || || | | Sbjct 175008 CAGTGTGAAGTCCTTCATCTCTTGATATAAGTTCATTTGAAAAGGTAAGTCCAGGCATTA 174949 Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221 | || ||| |||| |||||| || | | ||| ||||||||| || || ||||| | Sbjct 174948 ATGATCTTTTTTTGATCCAAAAAATGGCACAAAATGAACCAGAAAAGAAGATGCCTTCAA 174889 Query 93222 CGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTA 93281 | || ||||| || | | | ||| ||||| || ||| | ||||| || | Sbjct 174888 CAGCAGCAAAAGCGATTAATCTTTCAGCAAA---TGAATCATTCTAATTAATCCACTTCA 174832 Query 93282 AAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAAT 93341 ||||| |||||||| | ||| ||| | | || ||||| | | || |||| Sbjct 174831 TTGCCCACATTGCTTTTTTTTGTATAACAGGAACATTGTCAATAGCATGTAGAAGATAAT 174772 Query 93342 CTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGA 93401 | || | ||| |||||| || || || || |||||||| |||| ||||| | Sbjct 174771 TTTTTTCATTTTCATCAGTTATGTAAGTGTCAATCAAAAGAGAATAAGTTTCTGAATGTA 174712 Query 93402 CATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTT 93461 ||||||||| || |||| |||||| || |||||||| ||||| | || || ||||| Sbjct 174711 TATTCTCCATAGCTATTTAGAATCCATAAAAACATCTGGCTTCTGGAATTTGAACTTCAG 174652 Query 93462 GAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCA 93521 | ||||| || | || |||||||| || |||||||| ||||||||| ||||| | Sbjct 174651 TACAAAATTACTAAGCTAGGTTTTCATTTACAATACCATCACTTGCTGCAAAGAAAGCAA 174592 Query 93522 ATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATC 93570 | || ||||||||||||||| || || | | ||||| |||||||| Sbjct 174591 GGACATACTTTATAAAATGTTTTTCGTCTGCAGTGAGCTTTTCCCAATC 174543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556857020307320