Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq37 134 1e-26 seq21 132 4e-26 seq143 123 2e-23 seq56 123 2e-23 seq25 111 1e-19 seq23 109 5e-19 seq28 98.7 8e-16 >seq37 Length=526299 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| ||||||||||||| || || || || || || |||||||||| || ||| | | Sbjct 197469 ATGTAAATTTTTGTTAAGACCTTGACTGGAAAGACCATCACTCTTGATGTTGAACCATCA 197528 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | ||||| |||||| |||||||||| || || ||||| ||| || Sbjct 197529 GACACAATCGACGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 197588 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || || || ||||| ||| | || | || || || ||| Sbjct 197589 TAAAGACTCATTTTTGCAGGAAAGCAATTAGAAGATGGAAGAACACTTTCAGACTATAAC 197648 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| |||||||||| || | || ||||||||| ||||| | || || Sbjct 197649 ATTTAAAAAGAATCAACTCTCCACTTAGTTTTGAGATTGAGAGGTGG 197695 Score = 132 bits (146), Expect = 4e-26 Identities = 167/228 (73%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAA-AACGGTCACTCTTGAAGTGGAAACCAC 22277 ||| ||||||||||||| || || || || || || |||||||||| || ||| | | Sbjct 191460 ATGTAAATTTTTGTTAAGACCTTGACTGGAAAGTACCATCACTCTTGATGTTGAACCATC 191519 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || || |||| | ||||| |||||| |||||||||| || || ||||| ||| | Sbjct 191520 AGACACAGTCGACGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTA 191579 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 | || | || || ||||| || || || ||||| ||| | || | || || || || Sbjct 191580 ATAAAGACTCATTTTTGCAGGAAAGCAATTAGAAGATGGAAGAACACTTTCAGACTATAA 191639 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||| |||||||||| || | || ||||||||| ||||| | || || Sbjct 191640 CATTTAAAAAGAATCAACTCTCCACTTAGTTTTGAGATTGAGAGGTGG 191687 Score = 132 bits (146), Expect = 4e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| ||||||||||||| || || || || || || |||||||||| || ||| | | Sbjct 195153 ATGTAAATTTTTGTTAAGACCTTGACTGGAAAGACCATCACTCTTGATGTTGAACCATCA 195212 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | ||||| |||||| |||||||||| || || ||||| ||| || Sbjct 195213 GACACAATCGACGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 195272 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || || || ||||| ||| | || | || || || ||| Sbjct 195273 TAAAGACTCATTTTTGCAGGAAAGCAATTAGAAGATGGAAGAACACTTTCAGACTATAAC 195332 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 ||| |||||||||| || | || ||||||||| |||| Sbjct 195333 ATTTAAAAAGAATCAACTCTCCACTTAGTTTTGAGATT 195370 Score = 123 bits (136), Expect = 2e-23 Identities = 159/218 (73%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| ||||||||||||| || || || || || || |||||||||| || ||| | | Sbjct 197697 ATGTAAATTTTTGTTAAGACCTTGACTGGAAAGACCATCACTCTTGATGTTGAACCATCA 197756 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | ||||| |||||| |||||||||| || || ||||| ||| || Sbjct 197757 GACACAATCGACGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 197816 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || || || ||||| ||| | || | || || || ||| Sbjct 197817 TAAAGACTCATTTTTGCAGGAAAGCAATTAGAAGATGGAAGAACACTTTCAGACTATAAC 197876 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 ||| |||||||||| || | || |||||||| |||| Sbjct 197877 ATTTAAAAAGAATCAACTCTCCA-CTAGTTTTGAGATT 197913 >seq21 Length=592296 Score = 132 bits (146), Expect = 4e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||| |||||||||||||||| | || || || || |||||||||| || || | Sbjct 450190 AATATGTAAATTTTTGTTAAAACCCTGACGGGAAAGACCATCACTCTTGATGTAGAGCCA 450249 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | |||| | | ||| || ||| |||| ||||| || || ||||| ||| Sbjct 450250 TCAGACACCATTGACGCTGTTAAAGCTAAGATTTAAGATAAGGAAGGAATCCCACCTGAT 450309 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | | || ||||| || ||||| |||| ||| | || | || |||||| Sbjct 450310 TAATAAAGATTGATTTTTGCAGGAAAACAACTAGAAGATGGAAGAACTCTTTCAGATTAC 450369 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 || ||| |||||||||| ||| |||||||||||||| |||| Sbjct 450370 AATATTTAAAAAGAATCAACCTTACATTTAGTTTTGAGATT 450410 >seq143 Length=219650 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || ||||| || ||||| |||| ||||| || || | | Sbjct 171684 ATGCAAATTTTTGTCAAGACCTTAACTGGAAAAACAATCACACTTGATGTCGAGCCATCA 171743 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | ||||| |||||| ||||||| || || || ||||| ||| | Sbjct 171744 GACACAATTGACGCTGTCAAAGCTAAAATTTAAGACAAAGAAGGAATACCACCTGATTAG 171803 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| ||||| || ||| | ||||| ||| | || | || || || || Sbjct 171804 TAAAGGCTTATTTTTGCAGGGAAATAATTAGAAGATGGAAGAACTCTTTCAGACTATAAT 171863 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || |||| ||||| ||| | ||||||||||| | ||| | |||||| Sbjct 171864 ATCTAAAAGGAATCAACCCTTCATTTAGTTTTAAGGTTGAGAGGAGGT 171911 >seq56 Length=425007 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||| ||||||| |||||||| | || || || || ||||||| || || ||| | Sbjct 240083 AAAAATGTAAATTTTCGTTAAAACACTCACAGGAAAGACAATCACTCTCGATGTTGAACC 240142 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | |||| | ||||| |||||| |||| ||||| || || ||||| || Sbjct 240143 ATCAGACACAATTGACGCTGTCAAAGCTAAAATTTAAGATAAGGAAGGAATCCCACCTGA 240202 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 | || || | || || ||||| || || | ||||| ||| | || | || || || Sbjct 240203 TTAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGACTA 240262 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||||||||| || | || ||||||||| ||||| | || || Sbjct 240263 TAACATTCAAAAAGAATCAACTCTTCACTTAGTTTTGAGATTGAGAGGTGG 240313 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| ||||||||||||| || || || || || || |||||||||| || ||| | | Sbjct 240315 ATGTAAATTTTTGTTAAGACCTTGACTGGAAAGACCATCACTCTTGATGTTGAACCATCA 240374 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | ||||| |||||| |||||||||| || || ||||| ||| || Sbjct 240375 GACACAATTGATGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 240434 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || || | ||||| ||| | || | || || || ||| Sbjct 240435 TAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACTCTTTCAGACTATAAC 240494 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| |||||||||| || | || ||||| || ||||| | || || Sbjct 240495 ATTTAAAAAGAATCAACACTTCACTTAGTCTTAAGATTGAGAGGTGG 240541 >seq25 Length=585425 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||| |||||||||||||||| | || || || || |||||||||| || || | Sbjct 449891 AATATGTAAATTTTTGTTAAAACCCTCACAGGCAAGACCATCACTCTTGATGTTGAGCCA 449950 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || | | | || ||| ||| |||||||||| || || || || ||| Sbjct 449951 TCTGACACCATCGATGCTGTTAAGGCAAAGATTTAAGACAAGGAAGGAATCCCTCCTGAT 450010 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | | || ||||| || || || || || ||| | || | || ||||| Sbjct 450011 TAATAAAGATTAATTTTTGCTGGAAAGCAATTGGAAGATGGAAGAACACTTTCAGATTAT 450070 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| |||||||||| || | |||||||||||| || | | |||||| Sbjct 450071 AACATCTAAAAAGAATCAACTCTCCATTTAGTTTTGAGACTTAGAGGAGGT 450121 >seq23 Length=588601 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| |||| ||||||||||| | || || || || | |||||||| || ||| | | Sbjct 76677 ATGTAAATCTTTGTTAAAACACTCACAGGAAAGACAATTACTCTTGATGTTGAACCATCT 76736 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | | ||| ||||| |||||||||| || || ||||||||| || Sbjct 76737 GATACTATTGATGCTGTTAAAGCTAAAATCTAAGACAAGGAAGGAATCCCACCCGATTAA 76796 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| ||||| || ||| | ||||| || | || | || || || ||| Sbjct 76797 TAAAGACTTATCTTTGCAGGAAAATAATTAGAAGACGGAAGAACACTTTCAGACTATAAC 76856 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 || |||| ||||| || | || ||||||||| |||| Sbjct 76857 ATCTAAAAGGAATCAACACTCCACTTAGTTTTGAGATT 76894 >seq28 Length=561789 Score = 98.7 bits (108), Expect = 8e-16 Identities = 171/248 (69%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 22201 TTTTATACATTTGTAA--AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCA 22258 ||||| | |||| || | ||| ||||||||||||| || | || || || || ||| Sbjct 91017 TTTTAAATATTTAAAATAATATGTAAATTTTTGTTAAGACCCTTACAGGGAAGACCATCA 90958 Query 22259 CTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGG 22318 | ||||| || || | | ||||| | || | | | || ||| ||| ||||||| | Sbjct 90957 CACTTGATGTTGAGCCATCTGATACTATCGATGCTGTTAAGGCAAAGATTTAAGACAAAG 90898 Query 22319 AGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACC 22378 | || || ||||| ||| || || | | || ||||| || || || || || ||| Sbjct 90897 AAGGAATCCCACCTGATTAATAAAGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGAA 90838 Query 22379 GCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGC 22438 | || | || ||||| ||||| |||||||||| || | |||||||| ||| || | Sbjct 90837 GAACTCTTTCAGATTATAACATCTAAAAAGAATCAACTCTCCATTTAGTATTGAGACTCA 90778 Query 22439 GCGGAGGT 22446 | |||||| Sbjct 90777 GAGGAGGT 90770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725222318795