Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq143 123 2e-23 seq21 109 5e-19 seq37 95.1 1e-14 seq56 91.5 1e-13 seq23 82.4 7e-11 >seq143 Length=219650 Score = 123 bits (136), Expect = 2e-23 Identities = 171/238 (72%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 45104 TTATTTT-ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATAT 45162 ||||||| || ||||| | | ||| || |||| ||| || ||||||||||||| ||||| Sbjct 171921 TTATTTTCATACCTCCTCTCAACCTTAAAACTAAATGAAGGGTTGATTCCTTTTAGATAT 171862 Query 45163 TATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCT 45222 |||| || | ||| | ||| || |||| ||| ||||| | || | | || || Sbjct 171861 TATAGTCTGAAAGAGTTCTTCCATCTTCTAATTATTTCCCTGCAAAAATAAGCCTTTACT 171802 Query 45223 GGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGG 45282 || || || || |||||||| |||| |||||| ||||| || || | ||||| | Sbjct 171801 AATCAGGTGGTATTCCTTCTTTGTCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTG 171742 Query 45283 AAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | | |||||| || || || | ||||| || |||| || || |||||||||||||| Sbjct 171741 ATGGCTCGACATCAAGTGTGATTGTTTTTCCAGTTAAGGTCTTGACAAAAATTTGCAT 171684 >seq21 Length=592296 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| ||| | |||||||| |||| ||||| ||||| | ||| | | Sbjct 450407 CTCAAAACTAAATGTAAGGTTGATTCTTTTTAAATATTGTAATCTGAAAGAGTTCTTCCA 450348 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || | |||||||||||| | ||||||| || | || || || || ||||| ||| Sbjct 450347 TCTTCTAGTTGTTTTCCTGCAAAAATCAATCTTTATTAATCAGGTGGGATTCCTTCCTTA 450288 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||| ||| || ||| | || || | |||||| || | ||| || || ||||| | Sbjct 450287 TCTTAAATCTTAGCTTTAACAGCGTCAATGGTGTCTGATGGCTCTACATCAAGAGTGATG 450228 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || ||||| |||||||||| ||| Sbjct 450227 GTCTTTCCCGTCAGGGTTTTAACAAAAATTTACAT 450193 >seq37 Length=526299 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| || || |||||||| |||| || ||||| || | ||| | | Sbjct 191446 CTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCA 191387 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||| |||||||| | || | || || | || || || || ||||| || Sbjct 191386 TCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTG 191327 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||| |||||| ||||| || || | ||||| || | || || || ||||| | Sbjct 191326 TCTTAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAACATCAAGAGTGATA 191267 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| ||||||||||| |||||||| Sbjct 191266 GTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 191232 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| || || |||||||| |||| || ||||| || | ||| | | Sbjct 195139 CTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCA 195080 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||| |||||||| | || | || || | || || || || ||||| || Sbjct 195079 TCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTG 195020 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||| |||||| ||||| || || | ||||| || | || || || ||||| | Sbjct 195019 TCTTAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAACATCAAGAGTGATA 194960 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| ||||||||||| |||||||| Sbjct 194959 GTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 194925 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| || || |||||||| |||| || ||||| || | ||| | | Sbjct 197455 CTCAAAACTAAGTGGAGGGTTGATTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCA 197396 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||| |||||||| | || | || || | || || || || ||||| || Sbjct 197395 TCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTG 197336 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||| |||||| ||||| || || | ||||| || | || || || ||||| | Sbjct 197335 TCTTAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAACATCAAGAGTGATA 197276 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| ||||||||||| |||||||| Sbjct 197275 GTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 197241 >seq56 Length=425007 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| || || |||||||| |||| || ||||| || | ||| | | Sbjct 117002 CTCAAGACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCA 116943 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||| |||||||| | || | || || | || || || || ||||| || Sbjct 116942 TCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTG 116883 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||| |||||| ||||| || || | ||||| || | || || || ||||||| Sbjct 116882 TCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAACATCAAGAGTAATA 116823 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| ||||||||||| |||| ||| Sbjct 116822 GTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 116788 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| || || |||||||| |||| || ||||| || | ||| | | Sbjct 127598 CTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCA 127657 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||| |||||||| | || | || || | || || || || ||||| || Sbjct 127658 TCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTG 127717 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||| |||||| ||||| || || | ||||| || | || || || ||||||| Sbjct 127718 TCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAACATCAAGAGTAATA 127777 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| ||||||||||| |||| ||| Sbjct 127778 GTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 127812 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| || || |||||||| |||| || ||||| || | ||| | | Sbjct 131127 CTCAAGACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCA 131068 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||| |||||||| | || | || || | || || || || ||||| || Sbjct 131067 TCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTG 131008 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||| |||||| ||||| || || | ||||| || | || || || ||||||| Sbjct 131007 TCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAACATCAAGAGTAATA 130948 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| ||||||||||| |||| ||| Sbjct 130947 GTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 130913 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| || || |||||||| |||| || ||||| || | ||| | | Sbjct 54820 CTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCA 54879 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||| |||||||| | || | || || | || || || || ||||| || Sbjct 54880 TCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTG 54939 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||| |||||| ||||| || || | ||||| || | || || || ||||| | Sbjct 54940 TCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCAGATGGTTCAACATCAAGAGTGATA 54999 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| ||||||||||| |||| ||| Sbjct 55000 GTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 55034 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| || || |||||||| |||| || ||||| || | ||| | | Sbjct 55828 CTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCA 55769 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||| |||||||| | || | || || | || || || || ||||| || Sbjct 55768 TCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTG 55709 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||| |||||| ||||| || || | ||||| || | || || || ||||| | Sbjct 55708 TCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCAGATGGTTCAACATCAAGAGTGATA 55649 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| ||||||||||| |||| ||| Sbjct 55648 GTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 55614 >seq23 Length=588601 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| || || ||||||||||||| ||| ||||| || | ||| | Sbjct 76891 CTCAAAACTAAGTGGAGTGTTGATTCCTTTTAGATGTTATAGTCTGAAAGTGTTCTTCCG 76832 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||| ||||||||| | || | || || | || || || || ||||| || Sbjct 76831 TCTTCTAATTATTTTCCTGCAAAGATAAGTCTTTATTAATCGGGTGGGATTCCTTCCTTG 76772 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||| ||||| ||| | || || | || || || | || || || ||||||| Sbjct 76771 TCTTAGATTTTAGCTTTAACAGCATCAATAGTATCAGATGGTTCAACATCAAGAGTAATT 76712 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || ||||| ||||| |||| ||| Sbjct 76711 GTCTTTCCTGTGAGTGTTTTAACAAAGATTTACAT 76677 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| || || ||||||||||||| ||||||||| || || ||| | Sbjct 77119 CTCAAGACTAAGTGAAGTGTTGATTCCTTTTAGATATTATAGTCTGAGAGTGTTCTTCCG 77060 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||| ||||||||| | || | || || | || || || || ||||| || Sbjct 77059 TCTTCTAATTATTTTCCTGCAAAGATAAGTCTTTATTAATCGGGTGGGATTCCTTCCTTG 77000 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||| ||||| ||| | || || | || || || | || || || ||||| | Sbjct 76999 TCTTAGATTTTAGCTTTAACAGCATCAATAGTATCAGATGGTTCAACATCAAGAGTGATT 76940 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || || || ||||||| ||| Sbjct 76939 GTCTTTCCTGTGAGTGTCTTGACGAAAATTTACAT 76905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000132028280