Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq25 109 1e-18 seq28 93.3 1e-13 seq56 91.5 3e-13 seq37 91.5 3e-13 >seq25 Length=585425 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||||| || | |||||||| || || |||| || ||| || || | | || Sbjct 450115 TCTAAGTCTCAAAACTAAATGGAGAGTTGATTCTTTTTAGATGTTATAATCTGAAAGTGT 450056 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||||| |||||||| || || || | | | | || ||| ||||| Sbjct 450055 TCTTCCATCTTCCAATTGCTTTCCAGCAAAAATTAATCTTTATTAATCAGGAGGGATTCC 449996 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || | ||||||| ||| || | |||| |||||| | || || ||||| | Sbjct 449995 TTCCTTGTCTTAAATCTTTGCCTTAACAGCATCGATGGTGTCAGATGGCTCAACATCAAG 449936 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTT 199625 ||||| ||||| || ||||| ||||| |||||||||| Sbjct 449935 AGTGATGGTCTTGCCTGTGAGGGTTTTAACAAAAATTT 449898 >seq28 Length=561789 Score = 93.3 bits (102), Expect = 1e-13 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||||| || | |||||||| || || |||| || ||| || || | | ||| ||| Sbjct 90780 AGTCTCAATACTAAATGGAGAGTTGATTCTTTTTAGATGTTATAATCTGAAAGAGTTCTT 90839 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||||| |||||||| || || || | | | | || || ||||||||| Sbjct 90840 CCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTTTATTAATCAGGTGGGATTCCTTCT 90899 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || | ||||||| ||| || | |||| || || | || || ||||| | ||| Sbjct 90900 TTGTCTTAAATCTTTGCCTTAACAGCATCGATAGTATCAGATGGCTCAACATCAAGTGTG 90959 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTT 199625 || ||||| || || || || || |||||||||| Sbjct 90960 ATGGTCTTCCCTGTAAGGGTCTTAACAAAAATTT 90993 >seq56 Length=425007 Score = 91.5 bits (100), Expect = 3e-13 Identities = 156/223 (70%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | ||| ||||| || || ||||| | ||| ||||| | | || ||||| Sbjct 240302 TCTCAAAACTAAGTGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGAAAGTGTTCTTCC 240243 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | | |||||| || || ||||| | | | || || |||||||| Sbjct 240242 ATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTT 240183 Query 199534 CTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 || | ||| ||| || || || | || | ||||||| || ||| ||||| | |||| Sbjct 240182 ATCTTAAAT-TTTAGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAACATCGAGAGTGA 240124 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 | ||||| || ||||| ||||| || |||||| |||||||| Sbjct 240123 TTGTCTTTCCTGTGAGTGTTTTAACGAAAATT---TACATTTT 240084 >seq37 Length=526299 Score = 91.5 bits (100), Expect = 3e-13 Identities = 156/223 (70%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | ||||||||| || || |||| | ||| ||||| | | || ||||| Sbjct 191447 TCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCC 191388 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | |||||||| || || ||||| | | | || || |||||||| Sbjct 191387 ATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTT 191328 Query 199534 CTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 || | ||| ||| || || || | |||| ||||||| || ||| ||||| | |||| Sbjct 191327 GTCTTAAAT-TTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAACATCAAGAGTGA 191269 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 | ||||| || || | ||||| ||||| ||||| |||||| Sbjct 191268 TAGTCTTTCCAGTTAATGTTTTTACAAATATTTG---CATTTT 191229 Score = 91.5 bits (100), Expect = 3e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | ||||||||| || || |||| | ||| ||||| | | || ||||| Sbjct 195140 TCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCC 195081 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | |||||||| || || ||||| | | | || || |||||||| Sbjct 195080 ATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTT 195021 Query 199534 CTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 || | ||| ||| || || || | |||| ||||||| || ||| ||||| | |||| Sbjct 195020 GTCTTAAAT-TTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAACATCAAGAGTGA 194962 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| || || | ||||| ||||| ||||| Sbjct 194961 TAGTCTTTCCAGTTAATGTTTTTACAAATATTTG 194928 Score = 89.7 bits (98), Expect = 1e-12 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | ||||||||| || || |||| | ||| ||||| | | || ||||| Sbjct 195368 TCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCC 195309 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | |||||||| || || ||||| | | | || || |||||||| Sbjct 195308 ATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTT 195249 Query 199534 CTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 || | ||| ||| || || || | |||| ||||||| || ||| ||||| | |||| Sbjct 195248 GTCTTAAAT-TTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAACATCAAGAGTGA 195190 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTT 199625 | ||||| || || | || || |||||||||| Sbjct 195189 TGGTCTTTCCAGTCAAGGTCTTAACAAAAATTT 195157 Score = 89.7 bits (98), Expect = 1e-12 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | ||||||||| || || |||| | ||| ||||| | | || ||||| Sbjct 197684 TCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCC 197625 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | |||||||| || || ||||| | | | || || |||||||| Sbjct 197624 ATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTT 197565 Query 199534 CTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 || | ||| ||| || || || | |||| ||||||| || ||| ||||| | |||| Sbjct 197564 GTCTTAAAT-TTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAACATCAAGAGTGA 197506 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTT 199625 | ||||| || || | || || |||||||||| Sbjct 197505 TGGTCTTTCCAGTCAAGGTCTTAACAAAAATTT 197473 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/214 (70%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | ||||||||| || || |||| | ||| ||||| | | || ||||| Sbjct 191676 TCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCC 191617 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | |||||||| || || ||||| | | | || || |||||||| Sbjct 191616 ATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTT 191557 Query 199534 CTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 || | ||| ||| || || || | ||||| ||||||| || ||| ||||| | |||| Sbjct 191556 GTCTTAAAT-TTTAGCTTTGACAGCGTCGACTGTGTCTGATGGTTCAACATCAAGAGTGA 191498 Query 199593 TCGT-CTTACCCGTGAGAGTTTTCACAAAAATTT 199625 | || ||| || || | || || |||||||||| Sbjct 191497 TGGTACTTTCCAGTCAAGGTCTTAACAAAAATTT 191464 Score = 87.8 bits (96), Expect = 4e-12 Identities = 155/223 (70%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | |||||| || || || |||| | ||| ||||| | | || ||||| Sbjct 197456 TCTCAAAACTAAGTGGAGGGTTGATTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCC 197397 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | |||||||| || || ||||| | | | || || |||||||| Sbjct 197396 ATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTT 197337 Query 199534 CTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 || | ||| ||| || || || | |||| ||||||| || ||| ||||| | |||| Sbjct 197336 GTCTTAAAT-TTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAACATCAAGAGTGA 197278 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 | ||||| || || | ||||| ||||| ||||| |||||| Sbjct 197277 TAGTCTTTCCAGTTAATGTTTTTACAAATATTTG---CATTTT 197238 Score = 86.0 bits (94), Expect = 1e-11 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||||||||| || || |||| | ||| ||||| | | || ||||||||||| | || Sbjct 197900 GTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTG 197841 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 |||||| || || ||||| | | | || || |||||||| || | ||| || Sbjct 197840 CTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAAT-TT 197782 Query 199546 TTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 | || || || | |||| ||||||| || ||| ||||| | ||||| ||||| || | Sbjct 197781 TAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAACATCAAGAGTGATGGTCTTTCCAG 197722 Query 199605 TGAGAGTTTTCACAAAAATTT 199625 | | || || |||||||||| Sbjct 197721 TCAAGGTCTTAACAAAAATTT 197701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178913398021381