Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25]
543 sequences; 68,016,588 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq47 194 2e-44
seq67 152 6e-32
>seq47
Length=473039
Score = 194 bits (214), Expect = 2e-44
Identities = 507/756 (67%), Gaps = 27/756 (4%)
Strand=Plus/Minus
Query 154362 TTCAATAAGTATCATAGTGAAACTGACATGATGAGATATATCTACGAGTTATGCTCTAAA 154421
||||||| | |||||||||||||| ||| ||||||| ||| || | ||| | | |||
Sbjct 239589 TTCAATACTTTACATAGTGAAACTGAAATGTTGAGATACATCAACTATTTAAGATAGAAA 239530
Query 154422 GATTTCTCATTAGTAAATGGTATGGTTCCACTTGGCAGTTGCACAATGAAATTAAATGCA 154481
||| ||||||||| ||| |||| || || | || ||||| || |||||||||||| |
Sbjct 239529 GATATCTCATTAGCAAAGTCTATGATTTCATTAGGTAGTTGTACTATGAAATTAAATCCT 239470
Query 154482 GCAGCAGAACTAATGCCTGTGTCATGGGAAGAGTT-TGCTAACGTGCATCCACATACACC 154540
| | | ||||||| |||| ||| ||| | ||||| | |||||| | ||||
Sbjct 239469 ACTTCCTTTATGTTGCCTGTTTCATTCCAAGGGTTCTCCTAAC-TACATCCATTTTCACC 239411
Query 154541 TATGATACAG-ACCATGGGTTATCAGAAAATTATAGATGACTTACAGAAATGGTTATGTG 154599
| | || | ||| |||||| | || | | ||| | | | ||||||||||| |
Sbjct 239410 TCT-ATCTTGCACCTAAGGTTATTAAGAATTAACTGATAATGTTGAAAAATGGTTATGCG 239352
Query 154600 ATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATG 154659
|||| || | || |||| || ||| ||||| || || | || || |||
Sbjct 239351 ATATTACTCAAATGGAAGCTATCTCCTTAATGCCTAATAGTGGTGCATAAGGAGAATATA 239292
Query 154660 CAGGACTGTTAGCAATC--CAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGT 154717
|||| |||| ||| || || ||| | | || || | | | |||||| |
Sbjct 239291 CAGGTTTGTTGTGCATCAGAAAATATCACATAATGAAT--GGTTAAAAAGACAGAAATAT 239234
Query 154718 ATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGAT 154777
||||| || ||| || ||||||||||||||||||||| ||||||| | || || |
Sbjct 239233 TTGTTTAATCCCAATATCTGCACATGGAACTAATCCTGCTTCTGCTGTCCTTGCTGGATT 239174
Query 154778 GAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAA 154837
|| |||||| || || ||| || ||||||| | | || | ||| | | ||
Sbjct 239173 AAATGTTGTACCAGT-AAATGTTAT--TGATGGTTATGTCGATTTGGCTGATTTGAATAA 239117
Query 154838 G-AAAGCA---ATCATGAATACATTTGAACTGTCATGTATTATGATTACATACCCATCTA 154893
| ||| || | |||||| | | | || | ||||| |||||||| || ||||| |
Sbjct 239116 GAAAATCAAAGAACATGAAAAAA----ACTTGGCTTGTATCATGATTACTTATCCATCAA 239061
Query 154894 CACATGGTGTATTTGAA-ACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGGT 154952
| |||| || | |||| | ||| ||| | || ||| | ||||||| ||||
Sbjct 239060 CTTATGGAGTTTATGAAGATTAAACAAAGAAAATCATTTAA-TTGATTCATGATCATGGA 239002
Query 154953 GGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGT 155012
||| || ||| | |||||||| ||| | |||||| | || ||| || | | |
Sbjct 239001 GGTTTAGTGTATATGGATGGAGCTAATATGAATGCATAAGTTGGA-TA--TACTTCTCCT 238945
Query 155013 GAGTAT---GGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACAT 155069
| ||| || || ||||||||||| | || | ||||||||||| | |||||||||
Sbjct 238944 GGATATCTAGGGGCTGATGTATGTCACTTGAATCTGCATAAAACATTTTCAATTCCACAT 238885
Query 155070 GGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTA 155105
||||| ||||||||||| ||||||| || | ||||
Sbjct 238884 GGAGGAGGAGGTCCTGGATTAGGTCCAATTGCTGTA 238849
Score = 147 bits (162), Expect = 3e-30
Identities = 174/236 (74%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 153205 TTATAGGTCAAGGATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTTCTTG 153264
|||||||| |||| || ||||| || ||||| || || |||| || ||||
Sbjct 240749 TTATAGGTTAAGGGTATTATGGCACTCACACACCATACGTAATCTTAAGAAATGTACTTG 240690
Query 153265 AGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGAT 153324
| | ||| | ||||| || ||||| ||||| || |||||||||| ||| | || ||||
Sbjct 240689 AAGACCCTGGATGGTATACGTCTTATACTCCATACTAAGCTGAGATTTCTTAAGGTAGAT 240630
Query 153325 TGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAA 153384
||||||||||| |||||| |||| | ||||| ||| | |||||| | || |||
Sbjct 240629 TGGAAGCTTTAATCAATTTTTAAACAGTAATCACTGAATTGACAGGAATGGATGTATCAA 240570
Query 153385 ACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTATTAGCATAT 153440
| || ||| |||| |||||||||||||| |||| |||||||||| | || ||| ||
Sbjct 240569 ATGCTTCTTTATTGGATGAAGCAACTGCTGCAGGAGAAGCAATGTTCTTGGCAAAT 240514
>seq67
Length=382826
Score = 152 bits (168), Expect = 6e-32
Identities = 487/741 (66%), Gaps = 21/741 (3%)
Strand=Plus/Plus
Query 154374 CATAGTGAAACTGACATGATGAGATATATCTACGAGTTATGCTCTAAAGATTTCTCATTA 154433
||||| |||||||| ||| ||||||| || | | ||| | || ||||| |||| |||
Sbjct 173502 CATAGCGAAACTGAAATGTTGAGATACATTAATTATTTAAGATCCAAAGACATCTCCTTA 173561
Query 154434 GTAAATGGTATGGTTCCACTTGGCAGTTGCACAATGAAATTAAATGCAGCAGCAGAACTA 154493
| ||| |||| || || | || ||||| || |||||||||||| | | | |
Sbjct 173562 GCAAAGTCTATGATTTCATTAGGTAGTTGTACTATGAAATTAAATCCTACTTCCTTTATG 173621
Query 154494 ATGCCTGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATACACCTATGATACAGACC 154553
||||||| || | ||| || || | | |||||| ||||| | || | |
Sbjct 173622 TTGCCTGTTTCCTTTTAAGGATTCTCTTAGCTACATCCATTCTCACCTTT-ATCTTGCAC 173680
Query 154554 ATG-GGTTATCAGAAAATTATAGATGACTTACAGAAATGGTTATGTGATATCACAGGGTT 154612
| || ||| | || | | ||| | | | ||||||||||||||||| ||| |
Sbjct 173681 TTAAGGATATTAAGAATTGACTGATAATGTTGAAAAATGGTTATGTGATATTACATAAAT 173740
Query 154613 TGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGC 154672
|| | || || ||| ||||| || || | || || ||| |||| | ||
Sbjct 173741 GGAAGCAATCTCTTTAATGCCTAATAGTGGTGCATAAGGAGAATATACAGGTTTATTGTG 173800
Query 154673 AATCCAAGCATACCA--TCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCA 154730
||| | ||| || ||| | || || | | | |||||| | ||||| || |||
Sbjct 173801 TATCAGAAAATATCACATCATGAAT--GGCCAAAAGGATAGAAATATTTGTTTAATTCCA 173858
Query 154731 GAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGT 154790
|| |||||||| || ||||||||| |||||| | || || | || ||||||
Sbjct 173859 ATATCTGCACATGGTACCAATCCTGCTTCAGCTGTCCTTGCTGGATTAAACGTTGTACCA 173918
Query 154791 GTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAAGAAAG-CAAT--- 154846
|| || ||| || |||||| | | || | | ||| | | | |||| |||
Sbjct 173919 GTTAA-TGTTATA--GATGGTTATGTTGATTTGACTGATTTGAATAGGAAAATCAAAGAG 173975
Query 154847 CATGAATACATTTGAACTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATT 154906
|||||| | || || |||||||||||||||| || ||||| ||| |||| || |
Sbjct 173976 CATGAAAAGGCTT----TGGCATGTATTATGATTACTTATCCATCAACATATGGAGTTTA 174031
Query 154907 TGAA-ACTAACATTAGACAGAT-ATGTAAGATCGTTCATGACAATGGTGGTCAGGTATAT 154964
|||| | ||| | ||| |||| || ||| | ||||||| |||| || || ||
Sbjct 174032 TGAAGATTAAACTAAGA-AGATCATTTAAT-TGATTCATGATCATGGAGGCTTAGTGTAC 174089
Query 154965 CTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCA 155024
| |||||||| ||| | |||||| | || ||| | || || | || ||
Sbjct 174090 ATGGATGGAGCTAATATGAATGCATAAGTTGGATATACTTCTCCTGGTTATCTGGGAGCT 174149
Query 155025 GATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCT 155084
|||||||||||| |||| | ||||||||||||| |||||||||||||| || |||||
Sbjct 174150 GATGTATGTCATTTAAATCTTCATAAAACATTCTCAATTCCACATGGAGGAGGTGGTCCA 174209
Query 155085 GGCGTAGGTCCTATAGGTGTA 155105
|| ||||||| || | ||||
Sbjct 174210 GGATTAGGTCCAATTGCTGTA 174230
Score = 123 bits (136), Expect = 3e-23
Identities = 140/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 153253 GAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATAT 153312
||||||| ||||| | ||| | ||||| ||||| || || || || || |||||||| |
Sbjct 172378 GAAACGTACTTGAAGACCCTGGATGGTATACATCCTATACACCATACCAGGCTGAGATTT 172437
Query 153313 CTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGAT 153372
| |||| |||| ||||||||| | ||||| |||| | ||||| ||| | || |||
Sbjct 172438 CATAGGGTCGATTAGAAGCTTTACTAAATTATTAAACTGTAATCACTGAATTGACTGGAA 172497
Query 153373 TACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTAT 153432
| || | || |||||| |||| ||||||||||| ||||||| |||||| ||| | |
Sbjct 172498 TGGATGTATCTAATGCATCTTTATTGGATGAAGCAACAGCAGCAGGAGAAGCGATGTTCT 172557
Query 153433 TAGCATAT 153440
| ||| ||
Sbjct 172558 TGGCAAAT 172565
Score = 100 bits (110), Expect = 3e-16
Identities = 171/248 (69%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 153769 AAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAG 153828
|||| |||||| | |||||||||| ||| || || ||||| || ||||||||| |
Sbjct 172891 AAAGATTTGGTGTACCTATGGGATTTGGTGGACCACATGCAGCTTTCTTTGCAGTTGAGG 172950
Query 153829 ACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGTA 153888
| | | || ||||| || || || | ||| | ||| || |||| | || |
Sbjct 172951 ATGAATTCAAAAGAAAAATGCCAGGTCGTATTATTGGTATTTCCAAAGATGCCAACGGAA 173010
Query 153889 ATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAA 153948
| |||| || ||| | || || | || ||||| | || || || ||||| |||||||
Sbjct 173011 AACAAGCTTATAGAATGTCATTATAAACAAGAGAATAACACATTAGAAGAGAAAAAGCAA 173070
Query 153949 CCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCAT 154008
| || ||||| || ||| | ||| | ||||||||||| |||| | |||||| | |
Sbjct 173071 CATCAAATATCTGTACTGCTTAAGCATTATTGGCTAATATGGCTGGTCTATATGCAACTT 173130
Query 154009 ATCATGGT 154016
||||||||
Sbjct 173131 ATCATGGT 173138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579208868593120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |