Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq47 194 2e-44 seq67 152 6e-32 >seq47 Length=473039 Score = 194 bits (214), Expect = 2e-44 Identities = 507/756 (67%), Gaps = 27/756 (4%) Strand=Plus/Minus Query 154362 TTCAATAAGTATCATAGTGAAACTGACATGATGAGATATATCTACGAGTTATGCTCTAAA 154421 ||||||| | |||||||||||||| ||| ||||||| ||| || | ||| | | ||| Sbjct 239589 TTCAATACTTTACATAGTGAAACTGAAATGTTGAGATACATCAACTATTTAAGATAGAAA 239530 Query 154422 GATTTCTCATTAGTAAATGGTATGGTTCCACTTGGCAGTTGCACAATGAAATTAAATGCA 154481 ||| ||||||||| ||| |||| || || | || ||||| || |||||||||||| | Sbjct 239529 GATATCTCATTAGCAAAGTCTATGATTTCATTAGGTAGTTGTACTATGAAATTAAATCCT 239470 Query 154482 GCAGCAGAACTAATGCCTGTGTCATGGGAAGAGTT-TGCTAACGTGCATCCACATACACC 154540 | | | ||||||| |||| ||| ||| | ||||| | |||||| | |||| Sbjct 239469 ACTTCCTTTATGTTGCCTGTTTCATTCCAAGGGTTCTCCTAAC-TACATCCATTTTCACC 239411 Query 154541 TATGATACAG-ACCATGGGTTATCAGAAAATTATAGATGACTTACAGAAATGGTTATGTG 154599 | | || | ||| |||||| | || | | ||| | | | ||||||||||| | Sbjct 239410 TCT-ATCTTGCACCTAAGGTTATTAAGAATTAACTGATAATGTTGAAAAATGGTTATGCG 239352 Query 154600 ATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATG 154659 |||| || | || |||| || ||| ||||| || || | || || ||| Sbjct 239351 ATATTACTCAAATGGAAGCTATCTCCTTAATGCCTAATAGTGGTGCATAAGGAGAATATA 239292 Query 154660 CAGGACTGTTAGCAATC--CAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGT 154717 |||| |||| ||| || || ||| | | || || | | | |||||| | Sbjct 239291 CAGGTTTGTTGTGCATCAGAAAATATCACATAATGAAT--GGTTAAAAAGACAGAAATAT 239234 Query 154718 ATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGAT 154777 ||||| || ||| || ||||||||||||||||||||| ||||||| | || || | Sbjct 239233 TTGTTTAATCCCAATATCTGCACATGGAACTAATCCTGCTTCTGCTGTCCTTGCTGGATT 239174 Query 154778 GAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAA 154837 || |||||| || || ||| || ||||||| | | || | ||| | | || Sbjct 239173 AAATGTTGTACCAGT-AAATGTTAT--TGATGGTTATGTCGATTTGGCTGATTTGAATAA 239117 Query 154838 G-AAAGCA---ATCATGAATACATTTGAACTGTCATGTATTATGATTACATACCCATCTA 154893 | ||| || | |||||| | | | || | ||||| |||||||| || ||||| | Sbjct 239116 GAAAATCAAAGAACATGAAAAAA----ACTTGGCTTGTATCATGATTACTTATCCATCAA 239061 Query 154894 CACATGGTGTATTTGAA-ACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGGT 154952 | |||| || | |||| | ||| ||| | || ||| | ||||||| |||| Sbjct 239060 CTTATGGAGTTTATGAAGATTAAACAAAGAAAATCATTTAA-TTGATTCATGATCATGGA 239002 Query 154953 GGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGT 155012 ||| || ||| | |||||||| ||| | |||||| | || ||| || | | | Sbjct 239001 GGTTTAGTGTATATGGATGGAGCTAATATGAATGCATAAGTTGGA-TA--TACTTCTCCT 238945 Query 155013 GAGTAT---GGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACAT 155069 | ||| || || ||||||||||| | || | ||||||||||| | ||||||||| Sbjct 238944 GGATATCTAGGGGCTGATGTATGTCACTTGAATCTGCATAAAACATTTTCAATTCCACAT 238885 Query 155070 GGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTA 155105 ||||| ||||||||||| ||||||| || | |||| Sbjct 238884 GGAGGAGGAGGTCCTGGATTAGGTCCAATTGCTGTA 238849 Score = 147 bits (162), Expect = 3e-30 Identities = 174/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 153205 TTATAGGTCAAGGATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTTCTTG 153264 |||||||| |||| || ||||| || ||||| || || |||| || |||| Sbjct 240749 TTATAGGTTAAGGGTATTATGGCACTCACACACCATACGTAATCTTAAGAAATGTACTTG 240690 Query 153265 AGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGAT 153324 | | ||| | ||||| || ||||| ||||| || |||||||||| ||| | || |||| Sbjct 240689 AAGACCCTGGATGGTATACGTCTTATACTCCATACTAAGCTGAGATTTCTTAAGGTAGAT 240630 Query 153325 TGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAA 153384 ||||||||||| |||||| |||| | ||||| ||| | |||||| | || ||| Sbjct 240629 TGGAAGCTTTAATCAATTTTTAAACAGTAATCACTGAATTGACAGGAATGGATGTATCAA 240570 Query 153385 ACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTATTAGCATAT 153440 | || ||| |||| |||||||||||||| |||| |||||||||| | || ||| || Sbjct 240569 ATGCTTCTTTATTGGATGAAGCAACTGCTGCAGGAGAAGCAATGTTCTTGGCAAAT 240514 >seq67 Length=382826 Score = 152 bits (168), Expect = 6e-32 Identities = 487/741 (66%), Gaps = 21/741 (3%) Strand=Plus/Plus Query 154374 CATAGTGAAACTGACATGATGAGATATATCTACGAGTTATGCTCTAAAGATTTCTCATTA 154433 ||||| |||||||| ||| ||||||| || | | ||| | || ||||| |||| ||| Sbjct 173502 CATAGCGAAACTGAAATGTTGAGATACATTAATTATTTAAGATCCAAAGACATCTCCTTA 173561 Query 154434 GTAAATGGTATGGTTCCACTTGGCAGTTGCACAATGAAATTAAATGCAGCAGCAGAACTA 154493 | ||| |||| || || | || ||||| || |||||||||||| | | | | Sbjct 173562 GCAAAGTCTATGATTTCATTAGGTAGTTGTACTATGAAATTAAATCCTACTTCCTTTATG 173621 Query 154494 ATGCCTGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATACACCTATGATACAGACC 154553 ||||||| || | ||| || || | | |||||| ||||| | || | | Sbjct 173622 TTGCCTGTTTCCTTTTAAGGATTCTCTTAGCTACATCCATTCTCACCTTT-ATCTTGCAC 173680 Query 154554 ATG-GGTTATCAGAAAATTATAGATGACTTACAGAAATGGTTATGTGATATCACAGGGTT 154612 | || ||| | || | | ||| | | | ||||||||||||||||| ||| | Sbjct 173681 TTAAGGATATTAAGAATTGACTGATAATGTTGAAAAATGGTTATGTGATATTACATAAAT 173740 Query 154613 TGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGC 154672 || | || || ||| ||||| || || | || || ||| |||| | || Sbjct 173741 GGAAGCAATCTCTTTAATGCCTAATAGTGGTGCATAAGGAGAATATACAGGTTTATTGTG 173800 Query 154673 AATCCAAGCATACCA--TCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCA 154730 ||| | ||| || ||| | || || | | | |||||| | ||||| || ||| Sbjct 173801 TATCAGAAAATATCACATCATGAAT--GGCCAAAAGGATAGAAATATTTGTTTAATTCCA 173858 Query 154731 GAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGT 154790 || |||||||| || ||||||||| |||||| | || || | || |||||| Sbjct 173859 ATATCTGCACATGGTACCAATCCTGCTTCAGCTGTCCTTGCTGGATTAAACGTTGTACCA 173918 Query 154791 GTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAAGAAAG-CAAT--- 154846 || || ||| || |||||| | | || | | ||| | | | |||| ||| Sbjct 173919 GTTAA-TGTTATA--GATGGTTATGTTGATTTGACTGATTTGAATAGGAAAATCAAAGAG 173975 Query 154847 CATGAATACATTTGAACTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATT 154906 |||||| | || || |||||||||||||||| || ||||| ||| |||| || | Sbjct 173976 CATGAAAAGGCTT----TGGCATGTATTATGATTACTTATCCATCAACATATGGAGTTTA 174031 Query 154907 TGAA-ACTAACATTAGACAGAT-ATGTAAGATCGTTCATGACAATGGTGGTCAGGTATAT 154964 |||| | ||| | ||| |||| || ||| | ||||||| |||| || || || Sbjct 174032 TGAAGATTAAACTAAGA-AGATCATTTAAT-TGATTCATGATCATGGAGGCTTAGTGTAC 174089 Query 154965 CTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCA 155024 | |||||||| ||| | |||||| | || ||| | || || | || || Sbjct 174090 ATGGATGGAGCTAATATGAATGCATAAGTTGGATATACTTCTCCTGGTTATCTGGGAGCT 174149 Query 155025 GATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCT 155084 |||||||||||| |||| | ||||||||||||| |||||||||||||| || ||||| Sbjct 174150 GATGTATGTCATTTAAATCTTCATAAAACATTCTCAATTCCACATGGAGGAGGTGGTCCA 174209 Query 155085 GGCGTAGGTCCTATAGGTGTA 155105 || ||||||| || | |||| Sbjct 174210 GGATTAGGTCCAATTGCTGTA 174230 Score = 123 bits (136), Expect = 3e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 153253 GAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATAT 153312 ||||||| ||||| | ||| | ||||| ||||| || || || || || |||||||| | Sbjct 172378 GAAACGTACTTGAAGACCCTGGATGGTATACATCCTATACACCATACCAGGCTGAGATTT 172437 Query 153313 CTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGAT 153372 | |||| |||| ||||||||| | ||||| |||| | ||||| ||| | || ||| Sbjct 172438 CATAGGGTCGATTAGAAGCTTTACTAAATTATTAAACTGTAATCACTGAATTGACTGGAA 172497 Query 153373 TACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTAT 153432 | || | || |||||| |||| ||||||||||| ||||||| |||||| ||| | | Sbjct 172498 TGGATGTATCTAATGCATCTTTATTGGATGAAGCAACAGCAGCAGGAGAAGCGATGTTCT 172557 Query 153433 TAGCATAT 153440 | ||| || Sbjct 172558 TGGCAAAT 172565 Score = 100 bits (110), Expect = 3e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 153769 AAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAG 153828 |||| |||||| | |||||||||| ||| || || ||||| || ||||||||| | Sbjct 172891 AAAGATTTGGTGTACCTATGGGATTTGGTGGACCACATGCAGCTTTCTTTGCAGTTGAGG 172950 Query 153829 ACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGTA 153888 | | | || ||||| || || || | ||| | ||| || |||| | || | Sbjct 172951 ATGAATTCAAAAGAAAAATGCCAGGTCGTATTATTGGTATTTCCAAAGATGCCAACGGAA 173010 Query 153889 ATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAA 153948 | |||| || ||| | || || | || ||||| | || || || ||||| ||||||| Sbjct 173011 AACAAGCTTATAGAATGTCATTATAAACAAGAGAATAACACATTAGAAGAGAAAAAGCAA 173070 Query 153949 CCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCAT 154008 | || ||||| || ||| | ||| | ||||||||||| |||| | |||||| | | Sbjct 173071 CATCAAATATCTGTACTGCTTAAGCATTATTGGCTAATATGGCTGGTCTATATGCAACTT 173130 Query 154009 ATCATGGT 154016 |||||||| Sbjct 173131 ATCATGGT 173138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579208868593120