Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq47 188 8e-43 seq67 163 3e-35 >seq47 Length=473039 Score = 188 bits (208), Expect = 8e-43 Identities = 502/745 (67%), Gaps = 29/745 (4%) Strand=Plus/Minus Query 159049 CATAGTGAGACTGACATGATGAGATATATCTATGAGTTAGCATCAAAAGATTTCTCATTA 159108 |||||||| ||||| ||| ||||||| ||| | | ||| || |||||| |||||||| Sbjct 239577 CATAGTGAAACTGAAATGTTGAGATACATCAACTATTTAAGATAGAAAGATATCTCATTA 239518 Query 159109 GTAAATGGTATGGTTCCACTTGGTAGTTGTACTATGAAACTAAACGCAGCATCAGAACTG 159168 | ||| |||| || || | |||||||||||||||||| |||| | | || || Sbjct 239517 GCAAAGTCTATGATTTCATTAGGTAGTTGTACTATGAAATTAAATCCTACTTCCTTTATG 239458 Query 159169 ATGCCTGTGTCATGGGAAGAGTT-TGCTAACGTGCATCCACATACACCTATGATACAG-A 159226 ||||||| |||| ||| ||| | ||||| | |||||| | ||||| | || | | Sbjct 239457 TTGCCTGTTTCATTCCAAGGGTTCTCCTAAC-TACATCCATTTTCACCTCT-ATCTTGCA 239400 Query 159227 CCATGGGTTATCAAAAAATTATAGATGACTTACAGAAATGGTTATGTGATATCACAGGGT 159286 || |||||| || || | | ||| | | | ||||||||||| ||||| || Sbjct 239399 CCTAAGGTTATTAAGAATTAACTGATAATGTTGAAAAATGGTTATGCGATATTACTCAAA 239340 Query 159287 TTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAG 159346 | || |||| || ||| ||||| || || | || || ||| |||| |||| Sbjct 239339 TGGAAGCTATCTCCTTAATGCCTAATAGTGGTGCATAAGGAGAATATACAGGTTTGTTGT 239280 Query 159347 CAATCCAAGCATACCA--TCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACC 159404 ||| | ||| || | | | || || | | | |||||| | ||||| || || Sbjct 239279 GCATCAGAAAATATCACATAATGAAT--GGTTAAAAAGACAGAAATATTTGTTTAATCCC 239222 Query 159405 AGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGG 159464 | || |||||||||||||||||||| || || || | || || | || |||||| Sbjct 239221 AATATCTGCACATGGAACTAATCCTGCTTCTGCTGTCCTTGCTGGATTAAATGTTGTACC 239162 Query 159465 TGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAG-CAAT-- 159521 || || ||| || |||||| | | || | ||| | | |||||| ||| Sbjct 239161 AGTAAA-TGTTAT--TGATGGTTATGTCGATTTGGCTGATTTGAATAAGAAAATCAAAGA 239105 Query 159522 -CATGAATACATTTGAACTGTCATGTATTATGATTACATATCCATCTACACATGGTGTAT 159580 |||||| | | | || | ||||| |||||||| |||||||| || |||| || | Sbjct 239104 ACATGAAAAAAACT----TGGCTTGTATCATGATTACTTATCCATCAACTTATGGAGTTT 239049 Query 159581 TTGAAAC--AAACATCAGACAGATATGTAAGATTG-TTCATGAGAATGGTGGTCAGGTAT 159637 |||| ||||| ||| | || ||| ||| ||||||| |||| ||| || | Sbjct 239048 ATGAAGATTAAACAA-AGAAAATCATTTAA--TTGATTCATGATCATGGAGGTTTAGTGT 238992 Query 159638 ATCTTGATGGTGCAAATCTAAATGCACAGGTAGG-TCTAGCAAAACCATGTGA-CTATGG 159695 || | ||||| || ||| | |||||| | || || | || | || | | ||| || Sbjct 238991 ATATGGATGGAGCTAATATGAATGCATAAGTTGGATATA-CTTCTCCTGGATATCTAGGG 238933 Query 159696 TGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGG 159755 || ||||||||||| | || | ||||| ||||| | |||||||||||||| ||||| Sbjct 238932 -GCTGATGTATGTCACTTGAATCTGCATAAAACATTTTCAATTCCACATGGAGGAGGAGG 238874 Query 159756 TCCTGGCGTAGGTCCTATTGGTGTA 159780 |||||| ||||||| |||| |||| Sbjct 238873 TCCTGGATTAGGTCCAATTGCTGTA 238849 Score = 150 bits (166), Expect = 2e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 157880 TTATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTG 157939 |||||||| |||| || ||||| || |||||| || || |||| || |||| Sbjct 240749 TTATAGGTTAAGGGTATTATGGCACTCACACACCATACGTAATCTTAAGAAATGTACTTG 240690 Query 157940 AGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGAT 157999 | | ||| | ||||| || ||||| ||||| || |||||||||| ||| | || |||| Sbjct 240689 AAGACCCTGGATGGTATACGTCTTATACTCCATACTAAGCTGAGATTTCTTAAGGTAGAT 240630 Query 158000 TGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCAA 158059 ||||||||||| |||||| |||| | ||||| ||| | |||||| | || ||| Sbjct 240629 TGGAAGCTTTAATCAATTTTTAAACAGTAATCACTGAATTGACAGGAATGGATGTATCAA 240570 Query 158060 ACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTGTTAGCATAT 158115 | || ||| |||| |||||||||||||| |||| |||||||||| | || ||| || Sbjct 240569 ATGCTTCTTTATTGGATGAAGCAACTGCTGCAGGAGAAGCAATGTTCTTGGCAAAT 240514 Score = 118 bits (130), Expect = 1e-21 Identities = 177/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 158444 AAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAG 158503 |||| ||||| | || ||||| | || || |||||||| || |||||||| || Sbjct 240188 AAAGATTTGGAGTACCAATGGGTTTTGGTGGACCTCATGCAGCTTTCTTTGCTGTCGAAG 240129 Query 158504 ACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGTA 158563 | ||| ||| ||||| || || || | ||| | ||| || |||| || || | | Sbjct 240128 ATGAGTTTAAAAGAAAAATGCCAGGACGTATTATTGGTATTTCTAAAGAT-GCAAACGGA 240070 Query 158564 ATA-AAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCA 158622 | | |||| || ||| | || |||| || ||||| | |||||||||||||| ||||| Sbjct 240069 AAACAAGCTTATAGAATGTCATTACAAACAAGAGAATAACATATCAGAAGAGAAAAAGCT 240010 Query 158623 ACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCA 158682 || ||| || ||||| || ||||| | | ||||||||| ||||||| |||||| | Sbjct 240009 ACATCTAATATTTGCACTGCCTAAGCATTATTAGCTAATATGGCTGGGTTTTATGCAACT 239950 Query 158683 TATCATGGT 158691 || |||||| Sbjct 239949 TACCATGGT 239941 >seq67 Length=382826 Score = 163 bits (180), Expect = 3e-35 Identities = 493/743 (66%), Gaps = 25/743 (3%) Strand=Plus/Plus Query 159049 CATAGTGAGACTGACATGATGAGATATATCTATGAGTTAGCATCAAAAGATTTCTCATTA 159108 ||||| || ||||| ||| ||||||| || || | ||| ||| ||||| |||| ||| Sbjct 173502 CATAGCGAAACTGAAATGTTGAGATACATTAATTATTTAAGATCCAAAGACATCTCCTTA 173561 Query 159109 GTAAATGGTATGGTTCCACTTGGTAGTTGTACTATGAAACTAAACGCAGCATCAGAACTG 159168 | ||| |||| || || | |||||||||||||||||| |||| | | || || Sbjct 173562 GCAAAGTCTATGATTTCATTAGGTAGTTGTACTATGAAATTAAATCCTACTTCCTTTATG 173621 Query 159169 ATGCCTGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATACACCTATGATACAGACC 159228 ||||||| || | ||| || || | | |||||| ||||| | || | | Sbjct 173622 TTGCCTGTTTCCTTTTAAGGATTCTCTTAGCTACATCCATTCTCACCTTT-ATCTTGCAC 173680 Query 159229 ATG-GGTTATCAAAAAATTATAGATGACTTACAGAAATGGTTATGTGATATCACAGGGTT 159287 | || ||| || || | | ||| | | | ||||||||||||||||| ||| | Sbjct 173681 TTAAGGATATTAAGAATTGACTGATAATGTTGAAAAATGGTTATGTGATATTACATAAAT 173740 Query 159288 TGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGC 159347 || | || || ||| ||||| || || | || || ||| |||| | || Sbjct 173741 GGAAGCAATCTCTTTAATGCCTAATAGTGGTGCATAAGGAGAATATACAGGTTTATTGTG 173800 Query 159348 AATCCAAGCATACCA--TCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCA 159405 ||| | ||| || ||| | || || | | | |||||| | ||||| || ||| Sbjct 173801 TATCAGAAAATATCACATCATGAAT--GGCCAAAAGGATAGAAATATTTGTTTAATTCCA 173858 Query 159406 GAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGT 159465 || |||||||| || |||||||| ||||| || | || || | || |||||| Sbjct 173859 ATATCTGCACATGGTACCAATCCTGCTTCAGCTGTCCTTGCTGGATTAAACGTTGTACCA 173918 Query 159466 GTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAG-CAAT--- 159521 || || ||| || ||||| | | || | | ||| | | | |||| ||| Sbjct 173919 GTTAA-TGTTATA--GATGGTTATGTTGATTTGACTGATTTGAATAGGAAAATCAAAGAG 173975 Query 159522 CATGAATACATTTGAACTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATT 159581 |||||| | || || |||||||||||||||| |||||||| ||| |||| || | Sbjct 173976 CATGAAAAGGCTT----TGGCATGTATTATGATTACTTATCCATCAACATATGGAGTTTA 174031 Query 159582 TGAA-ACAAACATCAGACAGAT-ATGTAAGATTG-TTCATGAGAATGGTGGTCAGGTATA 159638 |||| | || | ||| |||| || ||| ||| ||||||| |||| || || || Sbjct 174032 TGAAGATTAAACTAAGA-AGATCATTTAA--TTGATTCATGATCATGGAGGCTTAGTGTA 174088 Query 159639 TCTTGATGGTGCAAATCTAAATGCACAGGTAGG-TCTAGCAAAACCATGTGACTATGGTG 159697 | ||||| || ||| | |||||| | || || | || | || || | || | Sbjct 174089 CATGGATGGAGCTAATATGAATGCATAAGTTGGATATA-CTTCTCCTGGTTATCTGGGAG 174147 Query 159698 CAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTC 159757 | |||||||||||| |||| | ||||| ||||||| |||||||||||||| || |||| Sbjct 174148 CTGATGTATGTCATTTAAATCTTCATAAAACATTCTCAATTCCACATGGAGGAGGTGGTC 174207 Query 159758 CTGGCGTAGGTCCTATTGGTGTA 159780 | || ||||||| |||| |||| Sbjct 174208 CAGGATTAGGTCCAATTGCTGTA 174230 Score = 127 bits (140), Expect = 2e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 157881 TATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTGA 157940 |||||| |||| | ||||| || |||||| || || | ||||||| ||||| Sbjct 172331 TATAGGATAAGGCTTTTATGGTACTCACACACCATATGTGATTTTGAGAAACGTACTTGA 172390 Query 157941 GAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATT 158000 | ||| | ||||| ||||| || || || || || |||||||| || |||| |||| Sbjct 172391 AGACCCTGGATGGTATACATCCTATACACCATACCAGGCTGAGATTTCATAGGGTCGATT 172450 Query 158001 GGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCAAA 158060 ||||||||| | ||||| |||| | ||||| ||| | || ||| | || | || Sbjct 172451 AGAAGCTTTACTAAATTATTAAACTGTAATCACTGAATTGACTGGAATGGATGTATCTAA 172510 Query 158061 CGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTGTTAGCATAT 158115 |||||| |||| ||||||||||| ||||||| |||||| ||| | || ||| || Sbjct 172511 TGCATCTTTATTGGATGAAGCAACAGCAGCAGGAGAAGCGATGTTCTTGGCAAAT 172565 Score = 105 bits (116), Expect = 8e-18 Identities = 172/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 158444 AAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAG 158503 |||| |||||| | |||||||||| || || || ||||| || ||||||||| | Sbjct 172891 AAAGATTTGGTGTACCTATGGGATTTGGTGGACCACATGCAGCTTTCTTTGCAGTTGAGG 172950 Query 158504 ACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGTA 158563 | | | || ||||| || || || | ||| | ||| || |||| | | || | Sbjct 172951 ATGAATTCAAAAGAAAAATGCCAGGTCGTATTATTGGTATTTCCAAAGATGCCAACGGAA 173010 Query 158564 ATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAA 158623 | |||| || ||| | || || | || ||||| | || || |||||||| ||||||| Sbjct 173011 AACAAGCTTATAGAATGTCATTATAAACAAGAGAATAACACATTAGAAGAGAAAAAGCAA 173070 Query 158624 CCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCAT 158683 | || ||||| || || ||||| | ||||||||||| |||| | |||||| | | Sbjct 173071 CATCAAATATCTGTACTGCTTAAGCATTATTGGCTAATATGGCTGGTCTATATGCAACTT 173130 Query 158684 ATCATGGT 158691 |||||||| Sbjct 173131 ATCATGGT 173138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588047208602480