Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25]
543 sequences; 68,016,588 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq56 138 3e-27
seq25 122 2e-22
seq21 122 2e-22
seq28 113 1e-19
seq23 107 4e-18
seq143 104 5e-17
>seq56
Length=425007
Score = 138 bits (152), Expect = 3e-27
Identities = 165/224 (74%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| | ||||||||| | ||||||||| || ||||||||||| || || || | ||| ||
Sbjct 240308 TCTCAATCTCAAAACTAAGTGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGAAAGTGT 240249
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| |||||||| | | ||| ||||| || || |||| || || || || || || ||
Sbjct 240248 TCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCC 240189
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
||| || |||| |||||| ||||| ||||| ||||| || ||| || || ||
Sbjct 240188 TTCCTTATCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAACATCGAG 240129
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
|| | ||||||||||| | ||||| ||||| | || |||||
Sbjct 240128 AGTGATTGTCTTTCCTGTGAGTGTTTTAACGAAAATTTACATTT 240085
>seq25
Length=585425
Score = 122 bits (134), Expect = 2e-22
Identities = 164/227 (72%), Gaps = 1/227 (0%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| ||||||||||| | || ||||| || ||||||| || || ||||| | ||| ||
Sbjct 450115 TCTAAGTCTCAAAACTAAATGGAGAGTTGATTCTTTTTAGATGTTATAATCTGAAAGTGT 450056
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| |||||||| | ||||| || || || || | || || || || ||||| || ||
Sbjct 450055 TCTTCCATCTTCCAATTGCTTTCCAGCAAAAATTAATCTTTATTAATCAGGAGGGATTCC 449996
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
||| ||||||| ||| ||| ||| || || |||||||| || || || |||||
Sbjct 449995 TTCCTTGTCTTAAATCTTTGCCTTAACAGCATCGATGGTGTCAGATGGCTCAACATCAAG 449936
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT-TTAT 195144
|| | ||||| ||||| | ||||| || || | || ||| ||||
Sbjct 449935 AGTGATGGTCTTGCCTGTGAGGGTTTTAACAAAAATTTACATATTAT 449889
>seq21
Length=592296
Score = 122 bits (134), Expect = 2e-22
Identities = 164/227 (72%), Gaps = 1/227 (0%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| | ||||||||| | || | || || ||||||| |||||||||||| | ||||||
Sbjct 450414 TCTTAATCTCAAAACTAAATGTAAGGTTGATTCTTTTTAAATATTGTAATCTGAAAGAGT 450355
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| |||||||| || || || ||||| || || | || || || || || || || ||
Sbjct 450354 TCTTCCATCTTCTAGTTGTTTTCCTGCAAAAATCAATCTTTATTAATCAGGTGGGATTCC 450295
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
||| || |||| ||| || || || ||||||||||| || || || |||||
Sbjct 450294 TTCCTTATCTTAAATCTTAGCTTTAACAGCGTCAATGGTGTCTGATGGCTCTACATCAAG 450235
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT-TTAT 195144
|| | |||||||| |||| ||||| || || | || ||| ||||
Sbjct 450234 AGTGATGGTCTTTCCCGTCAGGGTTTTAACAAAAATTTACATATTAT 450188
>seq28
Length=561789
Score = 113 bits (124), Expect = 1e-19
Identities = 162/227 (71%), Gaps = 1/227 (0%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|||||||||||| || | || ||||| || ||||||| || || ||||| | ||||||
Sbjct 90776 TCTGAGTCTCAATACTAAATGGAGAGTTGATTCTTTTTAGATGTTATAATCTGAAAGAGT 90835
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| |||||||| | ||||| || || || || | || || || || || || || ||
Sbjct 90836 TCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTTTATTAATCAGGTGGGATTCC 90895
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
||||||||||| ||| ||| ||| || || || || || || || || |||||
Sbjct 90896 TTCTTTGTCTTAAATCTTTGCCTTAACAGCATCGATAGTATCAGATGGCTCAACATCAAG 90955
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT-TTAT 195144
|| | ||||| ||||| | || || || || | || ||| ||||
Sbjct 90956 TGTGATGGTCTTCCCTGTAAGGGTCTTAACAAAAATTTACATATTAT 91002
>seq23
Length=588601
Score = 107 bits (118), Expect = 4e-18
Identities = 157/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| | ||||||||| | ||| || || || || |||| || || || || | ||| ||
Sbjct 76898 TCTTAATCTCAAAACTAAGTGGAGTGTTGATTCCTTTTAGATGTTATAGTCTGAAAGTGT 76839
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| || ||||| | | || ||||| |||||||||| || || || || || || ||
Sbjct 76838 TCTTCCGTCTTCTAATTATTTTCCTGCAAAGATAAGTCTTTATTAATCGGGTGGGATTCC 76779
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
||| ||||||| ||||| || || ||||| || || || ||| || |||||
Sbjct 76778 TTCCTTGTCTTAGATTTTAGCTTTAACAGCATCAATAGTATCAGATGGTTCAACATCAAG 76719
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|||| ||||||||||| | ||||| || || | || |||
Sbjct 76718 AGTAATTGTCTTTCCTGTGAGTGTTTTAACAAAGATTTACAT 76677
Score = 105 bits (116), Expect = 1e-17
Identities = 157/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| | |||||| || | |||||| || || || |||| ||||| || || | || ||
Sbjct 77126 TCTCAATCTCAAGACTAAGTGAAGTGTTGATTCCTTTTAGATATTATAGTCTGAGAGTGT 77067
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| || ||||| | | || ||||| |||||||||| || || || || || || ||
Sbjct 77066 TCTTCCGTCTTCTAATTATTTTCCTGCAAAGATAAGTCTTTATTAATCGGGTGGGATTCC 77007
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
||| ||||||| ||||| || || ||||| || || || ||| || |||||
Sbjct 77006 TTCCTTGTCTTAGATTTTAGCTTTAACAGCATCAATAGTATCAGATGGTTCAACATCAAG 76947
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| | ||||||||||| | || || ||||| | || ||||
Sbjct 76946 AGTGATTGTCTTTCCTGTGAGTGTCTTGACGAAAATTTACATT 76904
>seq143
Length=219650
Score = 104 bits (114), Expect = 5e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 194926 CTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCA 194985
|| ||||| | ||||| || || || |||| ||||| || || | ||||||||| |||
Sbjct 171898 CTTAAAACTAAATGAAGGGTTGATTCCTTTTAGATATTATAGTCTGAAAGAGTTCTTCCA 171839
Query 194986 TCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045
||||| | | || ||||| || ||||| | || | || || || || |||||||||
Sbjct 171838 TCTTCTAATTATTTCCCTGCAAAAATAAGCCTTTACTAATCAGGTGGTATTCCTTCTTTG 171779
Query 195046 TCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACC 195105
|||| |||||| ||||| ||||| ||||| || || || ||||| || |
Sbjct 171778 TCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGCTCGACATCAAGTGTGATT 171719
Query 195106 GTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||| || || || || || || | ||||||
Sbjct 171718 GTTTTTCCAGTTAAGGTCTTGACAAAAATTTGCAT 171684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109473881128481
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |