Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq56 138 3e-27 seq25 122 2e-22 seq21 122 2e-22 seq28 113 1e-19 seq23 107 4e-18 seq143 104 5e-17 >seq56 Length=425007 Score = 138 bits (152), Expect = 3e-27 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||||||| | ||||||||| || ||||||||||| || || || | ||| || Sbjct 240308 TCTCAATCTCAAAACTAAGTGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGAAAGTGT 240249 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | | ||| ||||| || || |||| || || || || || || || Sbjct 240248 TCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCC 240189 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || |||| |||||| ||||| ||||| ||||| || ||| || || || Sbjct 240188 TTCCTTATCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAACATCGAG 240129 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || | ||||||||||| | ||||| ||||| | || ||||| Sbjct 240128 AGTGATTGTCTTTCCTGTGAGTGTTTTAACGAAAATTTACATTT 240085 >seq25 Length=585425 Score = 122 bits (134), Expect = 2e-22 Identities = 164/227 (72%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||||||||| | || ||||| || ||||||| || || ||||| | ||| || Sbjct 450115 TCTAAGTCTCAAAACTAAATGGAGAGTTGATTCTTTTTAGATGTTATAATCTGAAAGTGT 450056 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | ||||| || || || || | || || || || ||||| || || Sbjct 450055 TCTTCCATCTTCCAATTGCTTTCCAGCAAAAATTAATCTTTATTAATCAGGAGGGATTCC 449996 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||||| ||| ||| ||| || || |||||||| || || || ||||| Sbjct 449995 TTCCTTGTCTTAAATCTTTGCCTTAACAGCATCGATGGTGTCAGATGGCTCAACATCAAG 449936 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT-TTAT 195144 || | ||||| ||||| | ||||| || || | || ||| |||| Sbjct 449935 AGTGATGGTCTTGCCTGTGAGGGTTTTAACAAAAATTTACATATTAT 449889 >seq21 Length=592296 Score = 122 bits (134), Expect = 2e-22 Identities = 164/227 (72%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||||||| | || | || || ||||||| |||||||||||| | |||||| Sbjct 450414 TCTTAATCTCAAAACTAAATGTAAGGTTGATTCTTTTTAAATATTGTAATCTGAAAGAGT 450355 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| || || || ||||| || || | || || || || || || || || Sbjct 450354 TCTTCCATCTTCTAGTTGTTTTCCTGCAAAAATCAATCTTTATTAATCAGGTGGGATTCC 450295 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || |||| ||| || || || ||||||||||| || || || ||||| Sbjct 450294 TTCCTTATCTTAAATCTTAGCTTTAACAGCGTCAATGGTGTCTGATGGCTCTACATCAAG 450235 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT-TTAT 195144 || | |||||||| |||| ||||| || || | || ||| |||| Sbjct 450234 AGTGATGGTCTTTCCCGTCAGGGTTTTAACAAAAATTTACATATTAT 450188 >seq28 Length=561789 Score = 113 bits (124), Expect = 1e-19 Identities = 162/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||||||||| || | || ||||| || ||||||| || || ||||| | |||||| Sbjct 90776 TCTGAGTCTCAATACTAAATGGAGAGTTGATTCTTTTTAGATGTTATAATCTGAAAGAGT 90835 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | ||||| || || || || | || || || || || || || || Sbjct 90836 TCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTTTATTAATCAGGTGGGATTCC 90895 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||| ||| ||| ||| || || || || || || || || ||||| Sbjct 90896 TTCTTTGTCTTAAATCTTTGCCTTAACAGCATCGATAGTATCAGATGGCTCAACATCAAG 90955 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT-TTAT 195144 || | ||||| ||||| | || || || || | || ||| |||| Sbjct 90956 TGTGATGGTCTTCCCTGTAAGGGTCTTAACAAAAATTTACATATTAT 91002 >seq23 Length=588601 Score = 107 bits (118), Expect = 4e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||||||| | ||| || || || || |||| || || || || | ||| || Sbjct 76898 TCTTAATCTCAAAACTAAGTGGAGTGTTGATTCCTTTTAGATGTTATAGTCTGAAAGTGT 76839 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | | || ||||| |||||||||| || || || || || || || Sbjct 76838 TCTTCCGTCTTCTAATTATTTTCCTGCAAAGATAAGTCTTTATTAATCGGGTGGGATTCC 76779 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||||| ||||| || || ||||| || || || ||| || ||||| Sbjct 76778 TTCCTTGTCTTAGATTTTAGCTTTAACAGCATCAATAGTATCAGATGGTTCAACATCAAG 76719 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||||||||| | ||||| || || | || ||| Sbjct 76718 AGTAATTGTCTTTCCTGTGAGTGTTTTAACAAAGATTTACAT 76677 Score = 105 bits (116), Expect = 1e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | |||||| || | |||||| || || || |||| ||||| || || | || || Sbjct 77126 TCTCAATCTCAAGACTAAGTGAAGTGTTGATTCCTTTTAGATATTATAGTCTGAGAGTGT 77067 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | | || ||||| |||||||||| || || || || || || || Sbjct 77066 TCTTCCGTCTTCTAATTATTTTCCTGCAAAGATAAGTCTTTATTAATCGGGTGGGATTCC 77007 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||||| ||||| || || ||||| || || || ||| || ||||| Sbjct 77006 TTCCTTGTCTTAGATTTTAGCTTTAACAGCATCAATAGTATCAGATGGTTCAACATCAAG 76947 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | ||||||||||| | || || ||||| | || |||| Sbjct 76946 AGTGATTGTCTTTCCTGTGAGTGTCTTGACGAAAATTTACATT 76904 >seq143 Length=219650 Score = 104 bits (114), Expect = 5e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 194926 CTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCA 194985 || ||||| | ||||| || || || |||| ||||| || || | ||||||||| ||| Sbjct 171898 CTTAAAACTAAATGAAGGGTTGATTCCTTTTAGATATTATAGTCTGAAAGAGTTCTTCCA 171839 Query 194986 TCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045 ||||| | | || ||||| || ||||| | || | || || || || ||||||||| Sbjct 171838 TCTTCTAATTATTTCCCTGCAAAAATAAGCCTTTACTAATCAGGTGGTATTCCTTCTTTG 171779 Query 195046 TCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACC 195105 |||| |||||| ||||| ||||| ||||| || || || ||||| || | Sbjct 171778 TCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGCTCGACATCAAGTGTGATT 171719 Query 195106 GTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || || || || || | |||||| Sbjct 171718 GTTTTTCCAGTTAAGGTCTTGACAAAAATTTGCAT 171684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109473881128481