Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq43 98.7 1e-15 seq74 89.7 7e-13 >seq43 Length=496757 Score = 98.7 bits (108), Expect = 1e-15 Identities = 127/173 (73%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 126587 ATTACGTATACCAGAAATTGGAGACAAATTTTGTTCTGGA-ATGGCCCAAAAAGGAACTT 126645 |||| | |||||| ||||||| |||||||||||| | || |||| ||||||| |||| Sbjct 488045 ATTAAGAATACCATAAATTGGTGACAAATTTTGTAGTAGACATGGAT-AAAAAGGTACTT 487987 Query 126646 GTGGTATGATTTATGCACAAGAAGATATGCCGTTTACACAATCAGGTATGACCCCCGATA 126705 | || |||| ||| | |||| ||| | || ||||| | |||| || | || || Sbjct 487986 GCGGAATGACCTATCGATAAGAGGATTTACCATTTACTTTAACAGGAATATCTCCTGACT 487927 Query 126706 TTATAATTAATCCAAATTGTATACCGTCAAGAATGACCATAAATCAAATAATT 126758 | | ||| |||||| ||||||| || ||||||||||| || | |||| ||| Sbjct 487926 TAACAATCAATCCACATTGTATTCCATCAAGAATGACTATTGGTAAAATTATT 487874 >seq74 Length=372420 Score = 89.7 bits (98), Expect = 7e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 182962 AACTTTAAGGATGAATTTAGCCATGGCTAAAGCTTACAATGCAGATTTTGATGGAGATGA 183021 ||| || || |||||||| | || || | | |||||||||||||||||||||||||| Sbjct 324446 AACATTCAGATTGAATTTATCTGTGTGTACACCATACAATGCAGATTTTGATGGAGATGA 324505 Query 183022 AATGAATTTACATGTTCCTCAGTCGTATGAAGCTACCGCTGAATTAA 183068 ||||||| | || |||||| | || |||||| | | || ||||||| Sbjct 324506 AATGAATATGCACGTTCCTTAATCTTATGAAACCATTGCAGAATTAA 324552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658398731088280