Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25]
543 sequences; 68,016,588 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq75 336 3e-87
seq80 329 4e-85
seq165 95.1 1e-14
seq142 86.0 7e-12
>seq75
Length=370783
Score = 336 bits (372), Expect = 3e-87
Identities = 669/980 (68%), Gaps = 63/980 (6%)
Strand=Plus/Plus
Query 36829 AAAAATCTTCATCTAACGTAAAT--TTTATTTCCTTATTACTATTCATAACTCCCATTTT 36886
||||||| |||| | |||||| ||||| | || || || |||| ||||| |||
Sbjct 196117 AAAAATCAGCATCCATAGTAAATACTTTATCTTATTTTT--TACTCATTACTCCAGCTTT 196174
Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946
|| || ||||| |||| ||||||||| ||||| || || |||| | |||||| | ||
Sbjct 196175 TTAGTAATCTCCTACTCTTCTTTCGAAGAAATTAGTTTTACCTTACAATGATATCATATC 196234
Query 36947 CATAAAATCAAATGGATTAGATGTATTATATATAGTAC-TACATGATAATTCCTTCAGAA 37005
||| | ||||| ||||| || ||| ||||| || | || |||| | | |
Sbjct 196235 CATCCATTCAAAAGGATTCTTTGAATTGTATATTTTAGGTGCACC-TAATGCAAATATTA 196293
Query 37006 GCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTT 37065
| ||||| ||||||||||| || |||| ||||| | | | || || ||||||| ||
Sbjct 196294 GTCTATCTGCAACAAATTCAATATATTATTTCATTAAATTAGAATTCATTCCAATTAATT 196353
Query 37066 TTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGC--ATCTT-TAACTA 37122
||||| | || || | |||| |||||| ||| || || || | ||| |
Sbjct 196354 CGACTGGTAAAGCTTCGCTTATAAATTCTTTTTCAATTTCAACTGCGGATGATATAATTT 196413
Query 37123 TATTAA--CAATAACTTCTTCAGTTGGGGGATATTT--TAAATATTTAAACAATAAACAT 37178
|| || | | | | || || || ||||| ||| | ||| | | | |||
Sbjct 196414 CATGAATTCGTTGATTACT-CAATT------TATTTACTAAGTGTTTGTAAAGAAGACAA 196466
Query 37179 GCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCT 37238
||||||||| ||| | |||||||||||| || |||||||| ||||| |||| ||||
Sbjct 196467 GCAAAATCAGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAATGTTAGTCCT 196526
Query 37239 GGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATA 37298
||||| || ||| ||||| ||||| |||||||| ||| || |||||||||||||||
Sbjct 196527 GGCATCAATGATCTCTTTTTTATCCAGAATATTGCACAAAATGAACCAGAAAAGAAAATA 196586
Query 37299 CCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATC 37358
||||||||||| ||||| || | | | | | | || | | | || | |||
Sbjct 196587 CCTTCAACTGCAGCAAAAGCAATTAATCTTTCAGCAAATGAGTCATTTTAGTTT---ATC 196643
Query 37359 CAtttttttGTCCAATCTGC---CTTTAATTTAACACATTCAATTGTTTCAATTGCTTTT 37415
||||| | | ||| ||| |||| || ||||| || | ||||| || |
Sbjct 196644 CATTTCATAGCCCACATTGCTTTCTTTTATATAACAGGCACATTA---TCAATAGCATGA 196700
Query 37416 AAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT--ATACA 37473
| || | |||||||| | ||| || |||||||||||||||| ||| | ||
Sbjct 196701 AGAAGGTAATTTTTTTCATTTTCATCAGTAATATAAGTATCAATTA--AAAGTGAGTAAG 196758
Query 37474 TTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATA 37533
|||| |||||||||||||| || ||||| | ||| ||||||||||| || ||||| | |
Sbjct 196759 TTTCTGAGTGAATATTTTCCATTGCTATTTAAAATCCATAAAAACATCTTGCTTCTGGAA 196818
Query 37534 ATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTG 37593
|||||| || || | || | ||| || |||||||| || || |||||||| ||||
Sbjct 196819 CTTGAACTTCAGTACAGAATTATTAAGCCAAATTTTCATTCACAATGCCATCACTTGCTG 196878
Query 37594 CAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAAT 37653
||||||||||||| ||||| |||||||| ||| ||||||| || || ||||| |||||
Sbjct 196879 CAAAGAAAGCAAGCACATACTTTATAAAGTGTTTTTCATCTGCTGTTAGTTTTTCCCAAT 196938
Query 37654 CATTAATATCTT----TTGAT------------------------AAATCAACTTCATCA 37685
| || | ||| | || || ||||| | || |||
Sbjct 196939 CTTTTAAATCCTAAAATTTATTAATTTACATATAATACCTAATACAAATCTATCTCTTCA 196998
Query 37686 ACGGTCCAAAAACTTGC-CAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTAT 37744
| |||||||||||||| ||| ||||||||| ||||||||||||||| || |||
Sbjct 196999 GCTGTCCAAAAACTTGCTTTATG-TTATTTATACATATTCCAAATATCATTATATTTTAT 197057
Query 37745 TGGAAATATTACAAATCTAT 37764
||||| | |||||||||||
Sbjct 197058 AGGAAACAATACAAATCTAT 197077
>seq80
Length=351589
Score = 329 bits (364), Expect = 4e-85
Identities = 589/849 (69%), Gaps = 31/849 (4%)
Strand=Plus/Minus
Query 36829 AAAAATCTTCATCTAACGTAAAT--TTTATTTCCTTATTACTATTCATAACTCCCATTTT 36886
||||||| |||| | |||||| ||||| | || || || |||||||||| |||
Sbjct 175365 AAAAATCAGCATCCATAGTAAATACTTTATCTTGTTTTT--TACTCATAACTCCAGCTTT 175308
Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946
|| ||| ||||| |||| ||||||||| |||||||| || |||| || ||||| | ||
Sbjct 175307 TTAATAGTCTCCGACTCTTCTTTCGAAGAAATTTGTTTTACCTTATAAGGATATCATATC 175248
Query 36947 CATAAAATCAAATGGATTAGATGTATTATATATAGTA----CTAC--ATGATAATTCCTT 37000
||| | ||||| ||||| || ||| ||||| || || | | || ||| ||
Sbjct 175247 CATCCATTCAAAAGGATTCTTTGAATTGTATATTTTAGGTGCTCCTAAAGAAAATA--TT 175190
Query 37001 CAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAAT 37060
| ||||| |||||||||||||| |||| ||||| | | | || || || ||
Sbjct 175189 AAT----CTATCTGCAACAAATTCTATATATTATTTCATTAAATTAGAATTCATTCCGAT 175134
Query 37061 TAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAAC 37120
|| || ||||| | || || || |||| |||||| ||| ||||| | | ||
Sbjct 175133 TAATTCAACTGGTAAAGCTTCACTAATAAATTCTTTTTCAATTTCAACAGC-TGATGAAA 175075
Query 37121 TATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAA----ATATTTAAACAATAAAC 37176
|| |||| | | ||| | || || | |||| || |||| | | | ||
Sbjct 175074 TAATTTAA---TGAATTCGTTGATTACTCAATTTATTAATCATATGTTTATATAGGAGAC 175018
Query 37177 ATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATC 37236
| ||||||||| || | ||||||||||| ||| | |||||| |||||||| | ||
Sbjct 175017 AAGCAAAATCAGTGTGAAGTCCTTCATCTCTTGATATAAGTTCATTTGAAAAGGTAAGTC 174958
Query 37237 CTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAA 37296
| |||||||| ||||||||| |||||||| || || ||| || ||||||||||| |
Sbjct 174957 CAGGCATTAATGATCTTTTTTTGATCCAAAAAATGGCACAAAATGAACCAGAAAAGAAGA 174898
Query 37297 TACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAA 37356
| |||||||| || ||||| || | | | | | | || |||| || | | ||
Sbjct 174897 TGCCTTCAACAGCAGCAAAAGCGATTAATCTTTCAGCAAA---TGAATCATTCTAATTAA 174841
Query 37357 TCCAtttttttGTCCAATCTGCCTTTAATT-TAACACATTCA-ATTGTTTCAATTGCTTT 37414
|||| || ||| ||| ||| ||| || || ||| | |||| ||||| || |
Sbjct 174840 TCCACTTCATTGCCCACATTGCTTTTTTTTGTATAACAGGAACATTG--TCAATAGCATG 174783
Query 37415 TAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACAT 37474
|| ||| | |||||||| | ||| ||||| ||||| ||||| | | | ||| |
Sbjct 174782 TAGAAGATAATTTTTTTCATTTTCATCAGTTATGTAAGTGTCAATCAAAAGAGAATAAGT 174723
Query 37475 TTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAA 37534
||| || || ||||| || |||||||| | || ||||||||||| || ||||| | |
Sbjct 174722 TTCTGAATGTATATTCTCCATAGCTATTTAGAATCCATAAAAACATCTGGCTTCTGGAAT 174663
Query 37535 TTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGC 37594
|||||| || || |||| || ||||| ||||||||| || || |||||||| |||||
Sbjct 174662 TTGAACTTCAGTACAAAATTACTAAGCTAGGTTTTCATTTACAATACCATCACTTGCTGC 174603
Query 37595 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATC 37654
|||||||||||| ||||| |||||||||||| |||| || | | |||| ||||||
Sbjct 174602 AAAGAAAGCAAGGACATACTTTATAAAATGTTTTTCGTCTGCAGTGAGCTTTTCCCAATC 174543
Query 37655 ATTAATATC 37663
|||| |||
Sbjct 174542 TTTAAGATC 174534
>seq165
Length=168162
Score = 95.1 bits (104), Expect = 1e-14
Identities = 141/199 (71%), Gaps = 6/199 (3%)
Strand=Plus/Plus
Query 78257 ATTTTTTAATGATATAGTGGAATTTTCTGAAAATATGGCAAATAAAGGAAAAATTGTTAT 78316
||||||||| || || |||||| |||| ||||||||| ||||||||| || ||
Sbjct 70802 ATTTTTTAAG---ATTGTTGAATTTAGTGAAGCAATGGCAAATCTAGGAAAAATAGTAAT 70858
Query 78317 TGTTTCGGCATTAGATGCTACATATCAAAGAAAAACATTTGGTAATATTCTAAATTTAAT 78376
|||| | || | |||| ||| | | | |||||| | || ||||||| | | ||| ||
Sbjct 70859 TGTTGCAGCTCTTGATGGTACTTTTGATAGAAAACCTTTCCGTAATATCTTGAGTTTGAT 70918
Query 78377 TCCATTATCTGAAAAGGTAATAAAATTAAATGCTATATGTAAAATATGTTTTAATGA--- 78433
|||||| ||||| ||| ||| |||| |||| | ||| | ||| || ||
Sbjct 70919 TCCATTGGCTGAACGTATAACAAAGTTAACTGCTGTCTGTTGGTTTTGTAAGAAAGAGAA 70978
Query 78434 TGCTGCATTTACAAAAAGA 78452
|||| ||||||||||||||
Sbjct 70979 TGCTTCATTTACAAAAAGA 70997
>seq142
Length=220426
Score = 86.0 bits (94), Expect = 7e-12
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 78270 ATAGTGGAATTTTCTGAAAATATGGCAAATAAAGGAAAAATTGTTATTGTTTCGGCATTA 78329
|| || || ||| ||| || ||||||||| |||||||||||| |||||| | || ||
Sbjct 110164 ATTGTCGAGTTTAGTGAGAAGATGGCAAATTTAGGAAAAATTGTAATTGTTGCAGCTCTA 110105
Query 78330 GATGCTACATATCAAAGAAAAACATTTGGTAATATTCTAAATTTAATTCCATTATCTGAA 78389
|||| || | | | || ||| | ||| |||||| |||| || ||||||||| |||||
Sbjct 110104 GATGGAACTTTTGATAGGAAACCTTTTCATAATATCTTAAACTTGATTCCATTAGCTGAA 110045
Query 78390 AAGGTAATAAAATTAAATGCTATATGT 78416
| | | |||| ||| || |||||
Sbjct 110044 AGAATCACAAAACTAACAGCAGTATGT 110018
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592312779649720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |