Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq75 336 3e-87 seq80 329 4e-85 seq165 95.1 1e-14 seq142 86.0 7e-12 >seq75 Length=370783 Score = 336 bits (372), Expect = 3e-87 Identities = 669/980 (68%), Gaps = 63/980 (6%) Strand=Plus/Plus Query 36829 AAAAATCTTCATCTAACGTAAAT--TTTATTTCCTTATTACTATTCATAACTCCCATTTT 36886 ||||||| |||| | |||||| ||||| | || || || |||| ||||| ||| Sbjct 196117 AAAAATCAGCATCCATAGTAAATACTTTATCTTATTTTT--TACTCATTACTCCAGCTTT 196174 Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946 || || ||||| |||| ||||||||| ||||| || || |||| | |||||| | || Sbjct 196175 TTAGTAATCTCCTACTCTTCTTTCGAAGAAATTAGTTTTACCTTACAATGATATCATATC 196234 Query 36947 CATAAAATCAAATGGATTAGATGTATTATATATAGTAC-TACATGATAATTCCTTCAGAA 37005 ||| | ||||| ||||| || ||| ||||| || | || |||| | | | Sbjct 196235 CATCCATTCAAAAGGATTCTTTGAATTGTATATTTTAGGTGCACC-TAATGCAAATATTA 196293 Query 37006 GCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTT 37065 | ||||| ||||||||||| || |||| ||||| | | | || || ||||||| || Sbjct 196294 GTCTATCTGCAACAAATTCAATATATTATTTCATTAAATTAGAATTCATTCCAATTAATT 196353 Query 37066 TTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGC--ATCTT-TAACTA 37122 ||||| | || || | |||| |||||| ||| || || || | ||| | Sbjct 196354 CGACTGGTAAAGCTTCGCTTATAAATTCTTTTTCAATTTCAACTGCGGATGATATAATTT 196413 Query 37123 TATTAA--CAATAACTTCTTCAGTTGGGGGATATTT--TAAATATTTAAACAATAAACAT 37178 || || | | | | || || || ||||| ||| | ||| | | | ||| Sbjct 196414 CATGAATTCGTTGATTACT-CAATT------TATTTACTAAGTGTTTGTAAAGAAGACAA 196466 Query 37179 GCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCT 37238 ||||||||| ||| | |||||||||||| || |||||||| ||||| |||| |||| Sbjct 196467 GCAAAATCAGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAATGTTAGTCCT 196526 Query 37239 GGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATA 37298 ||||| || ||| ||||| ||||| |||||||| ||| || ||||||||||||||| Sbjct 196527 GGCATCAATGATCTCTTTTTTATCCAGAATATTGCACAAAATGAACCAGAAAAGAAAATA 196586 Query 37299 CCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATC 37358 ||||||||||| ||||| || | | | | | | || | | | || | ||| Sbjct 196587 CCTTCAACTGCAGCAAAAGCAATTAATCTTTCAGCAAATGAGTCATTTTAGTTT---ATC 196643 Query 37359 CAtttttttGTCCAATCTGC---CTTTAATTTAACACATTCAATTGTTTCAATTGCTTTT 37415 ||||| | | ||| ||| |||| || ||||| || | ||||| || | Sbjct 196644 CATTTCATAGCCCACATTGCTTTCTTTTATATAACAGGCACATTA---TCAATAGCATGA 196700 Query 37416 AAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT--ATACA 37473 | || | |||||||| | ||| || |||||||||||||||| ||| | || Sbjct 196701 AGAAGGTAATTTTTTTCATTTTCATCAGTAATATAAGTATCAATTA--AAAGTGAGTAAG 196758 Query 37474 TTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATA 37533 |||| |||||||||||||| || ||||| | ||| ||||||||||| || ||||| | | Sbjct 196759 TTTCTGAGTGAATATTTTCCATTGCTATTTAAAATCCATAAAAACATCTTGCTTCTGGAA 196818 Query 37534 ATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTG 37593 |||||| || || | || | ||| || |||||||| || || |||||||| |||| Sbjct 196819 CTTGAACTTCAGTACAGAATTATTAAGCCAAATTTTCATTCACAATGCCATCACTTGCTG 196878 Query 37594 CAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAAT 37653 ||||||||||||| ||||| |||||||| ||| ||||||| || || ||||| ||||| Sbjct 196879 CAAAGAAAGCAAGCACATACTTTATAAAGTGTTTTTCATCTGCTGTTAGTTTTTCCCAAT 196938 Query 37654 CATTAATATCTT----TTGAT------------------------AAATCAACTTCATCA 37685 | || | ||| | || || ||||| | || ||| Sbjct 196939 CTTTTAAATCCTAAAATTTATTAATTTACATATAATACCTAATACAAATCTATCTCTTCA 196998 Query 37686 ACGGTCCAAAAACTTGC-CAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTAT 37744 | |||||||||||||| ||| ||||||||| ||||||||||||||| || ||| Sbjct 196999 GCTGTCCAAAAACTTGCTTTATG-TTATTTATACATATTCCAAATATCATTATATTTTAT 197057 Query 37745 TGGAAATATTACAAATCTAT 37764 ||||| | ||||||||||| Sbjct 197058 AGGAAACAATACAAATCTAT 197077 >seq80 Length=351589 Score = 329 bits (364), Expect = 4e-85 Identities = 589/849 (69%), Gaps = 31/849 (4%) Strand=Plus/Minus Query 36829 AAAAATCTTCATCTAACGTAAAT--TTTATTTCCTTATTACTATTCATAACTCCCATTTT 36886 ||||||| |||| | |||||| ||||| | || || || |||||||||| ||| Sbjct 175365 AAAAATCAGCATCCATAGTAAATACTTTATCTTGTTTTT--TACTCATAACTCCAGCTTT 175308 Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946 || ||| ||||| |||| ||||||||| |||||||| || |||| || ||||| | || Sbjct 175307 TTAATAGTCTCCGACTCTTCTTTCGAAGAAATTTGTTTTACCTTATAAGGATATCATATC 175248 Query 36947 CATAAAATCAAATGGATTAGATGTATTATATATAGTA----CTAC--ATGATAATTCCTT 37000 ||| | ||||| ||||| || ||| ||||| || || | | || ||| || Sbjct 175247 CATCCATTCAAAAGGATTCTTTGAATTGTATATTTTAGGTGCTCCTAAAGAAAATA--TT 175190 Query 37001 CAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAAT 37060 | ||||| |||||||||||||| |||| ||||| | | | || || || || Sbjct 175189 AAT----CTATCTGCAACAAATTCTATATATTATTTCATTAAATTAGAATTCATTCCGAT 175134 Query 37061 TAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAAC 37120 || || ||||| | || || || |||| |||||| ||| ||||| | | || Sbjct 175133 TAATTCAACTGGTAAAGCTTCACTAATAAATTCTTTTTCAATTTCAACAGC-TGATGAAA 175075 Query 37121 TATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAA----ATATTTAAACAATAAAC 37176 || |||| | | ||| | || || | |||| || |||| | | | || Sbjct 175074 TAATTTAA---TGAATTCGTTGATTACTCAATTTATTAATCATATGTTTATATAGGAGAC 175018 Query 37177 ATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATC 37236 | ||||||||| || | ||||||||||| ||| | |||||| |||||||| | || Sbjct 175017 AAGCAAAATCAGTGTGAAGTCCTTCATCTCTTGATATAAGTTCATTTGAAAAGGTAAGTC 174958 Query 37237 CTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAA 37296 | |||||||| ||||||||| |||||||| || || ||| || ||||||||||| | Sbjct 174957 CAGGCATTAATGATCTTTTTTTGATCCAAAAAATGGCACAAAATGAACCAGAAAAGAAGA 174898 Query 37297 TACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAA 37356 | |||||||| || ||||| || | | | | | | || |||| || | | || Sbjct 174897 TGCCTTCAACAGCAGCAAAAGCGATTAATCTTTCAGCAAA---TGAATCATTCTAATTAA 174841 Query 37357 TCCAtttttttGTCCAATCTGCCTTTAATT-TAACACATTCA-ATTGTTTCAATTGCTTT 37414 |||| || ||| ||| ||| ||| || || ||| | |||| ||||| || | Sbjct 174840 TCCACTTCATTGCCCACATTGCTTTTTTTTGTATAACAGGAACATTG--TCAATAGCATG 174783 Query 37415 TAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACAT 37474 || ||| | |||||||| | ||| ||||| ||||| ||||| | | | ||| | Sbjct 174782 TAGAAGATAATTTTTTTCATTTTCATCAGTTATGTAAGTGTCAATCAAAAGAGAATAAGT 174723 Query 37475 TTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAA 37534 ||| || || ||||| || |||||||| | || ||||||||||| || ||||| | | Sbjct 174722 TTCTGAATGTATATTCTCCATAGCTATTTAGAATCCATAAAAACATCTGGCTTCTGGAAT 174663 Query 37535 TTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGC 37594 |||||| || || |||| || ||||| ||||||||| || || |||||||| ||||| Sbjct 174662 TTGAACTTCAGTACAAAATTACTAAGCTAGGTTTTCATTTACAATACCATCACTTGCTGC 174603 Query 37595 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATC 37654 |||||||||||| ||||| |||||||||||| |||| || | | |||| |||||| Sbjct 174602 AAAGAAAGCAAGGACATACTTTATAAAATGTTTTTCGTCTGCAGTGAGCTTTTCCCAATC 174543 Query 37655 ATTAATATC 37663 |||| ||| Sbjct 174542 TTTAAGATC 174534 >seq165 Length=168162 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/199 (71%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 78257 ATTTTTTAATGATATAGTGGAATTTTCTGAAAATATGGCAAATAAAGGAAAAATTGTTAT 78316 ||||||||| || || |||||| |||| ||||||||| ||||||||| || || Sbjct 70802 ATTTTTTAAG---ATTGTTGAATTTAGTGAAGCAATGGCAAATCTAGGAAAAATAGTAAT 70858 Query 78317 TGTTTCGGCATTAGATGCTACATATCAAAGAAAAACATTTGGTAATATTCTAAATTTAAT 78376 |||| | || | |||| ||| | | | |||||| | || ||||||| | | ||| || Sbjct 70859 TGTTGCAGCTCTTGATGGTACTTTTGATAGAAAACCTTTCCGTAATATCTTGAGTTTGAT 70918 Query 78377 TCCATTATCTGAAAAGGTAATAAAATTAAATGCTATATGTAAAATATGTTTTAATGA--- 78433 |||||| ||||| ||| ||| |||| |||| | ||| | ||| || || Sbjct 70919 TCCATTGGCTGAACGTATAACAAAGTTAACTGCTGTCTGTTGGTTTTGTAAGAAAGAGAA 70978 Query 78434 TGCTGCATTTACAAAAAGA 78452 |||| |||||||||||||| Sbjct 70979 TGCTTCATTTACAAAAAGA 70997 >seq142 Length=220426 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 78270 ATAGTGGAATTTTCTGAAAATATGGCAAATAAAGGAAAAATTGTTATTGTTTCGGCATTA 78329 || || || ||| ||| || ||||||||| |||||||||||| |||||| | || || Sbjct 110164 ATTGTCGAGTTTAGTGAGAAGATGGCAAATTTAGGAAAAATTGTAATTGTTGCAGCTCTA 110105 Query 78330 GATGCTACATATCAAAGAAAAACATTTGGTAATATTCTAAATTTAATTCCATTATCTGAA 78389 |||| || | | | || ||| | ||| |||||| |||| || ||||||||| ||||| Sbjct 110104 GATGGAACTTTTGATAGGAAACCTTTTCATAATATCTTAAACTTGATTCCATTAGCTGAA 110045 Query 78390 AAGGTAATAAAATTAAATGCTATATGT 78416 | | | |||| ||| || ||||| Sbjct 110044 AGAATCACAAAACTAACAGCAGTATGT 110018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592312779649720