Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq37 143 2e-29 seq143 134 1e-26 seq56 134 1e-26 seq21 134 1e-26 seq25 125 6e-24 seq28 122 7e-23 >seq37 Length=526299 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| || | |||||||| || ||||| |||||||||| || || || || | Sbjct 197469 TTCCACCTCTCAATCTCAAAACTAAGTGGAGGGTTGATTCTTTTTAAATGTTATAGTCTG 197410 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||||| |||| || |||||||| |||||||| || | | | || ||| || | Sbjct 197409 AAAGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTG 197350 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || |||| |||||| ||| ||| || | ||||| || | ||| | Sbjct 197349 GGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAA 197290 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | |||||||||| || || || ||||| |||||||||||||| ||||| Sbjct 197289 CATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 197241 Score = 138 bits (152), Expect = 9e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| || | |||||||| || || || |||||||||| || || || || | Sbjct 191460 TTCCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTG 191401 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||||| |||| || |||||||| |||||||| || | | | || ||| || | Sbjct 191400 AAAGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTG 191341 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || |||| |||||| ||| ||| || | ||||| || | ||| | Sbjct 191340 GGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAA 191281 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | |||||||||| || || || ||||| |||||||||||||| ||||| Sbjct 191280 CATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 191232 Score = 138 bits (152), Expect = 9e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| || | |||||||| || || || |||||||||| || || || || | Sbjct 195153 TTCCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTG 195094 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||||| |||| || |||||||| |||||||| || | | | || ||| || | Sbjct 195093 AAAGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTG 195034 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || |||| |||||| ||| ||| || | ||||| || | ||| | Sbjct 195033 GGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAA 194974 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | |||||||||| || || || ||||| |||||||||||||| ||||| Sbjct 194973 CATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 194925 >seq143 Length=219650 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| || | |||||||||||||||||| ||||| |||| ||||| || || | Sbjct 171910 CCTCCTCTCAACCTTAAAACTAAATGAAGGGTTGATTCCTTTTAGATATTATAGTCTGAA 171851 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || |||| || |||||||| || | | | | ||| || || Sbjct 171850 AGAGTTCTTCCATCTTCTAATTATTTCCCTGCAAAAATAAGCCTTTACTAATCAGGTGGT 171791 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| |||| |||||| ||| ||| || | ||||| || | || || Sbjct 171790 ATTCCTTCTTTGTCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGCTCGACA 171731 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| ||||| || ||||| || || ||||| || ||||| Sbjct 171730 TCAAGTGTGATTGTTTTTCCAGTTAAGGTCTTGACAAAAATTTGCAT 171684 >seq56 Length=425007 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| || | |||||||| || || || |||||||||| || || || || | Sbjct 54806 TTCCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTG 54865 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||||| |||| || |||| ||| |||||||| || | | | || ||| || | Sbjct 54866 AAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTG 54925 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || |||| |||||| ||| ||| || | |||||||| | ||| | Sbjct 54926 GGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCAGATGGTTCAA 54985 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 | |||||||||| || || || ||||| |||||||||||||| | ||| || Sbjct 54986 CATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACATTGT 55037 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| || | |||||||| || || || |||||||||| || || || || | Sbjct 55842 TTCCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTG 55783 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||||| |||| || |||| ||| |||||||| || | | | || ||| || | Sbjct 55782 AAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTG 55723 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || |||| |||||| ||| ||| || | |||||||| | ||| | Sbjct 55722 GGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCAGATGGTTCAA 55663 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 | |||||||||| || || || ||||| |||||||||||||| | ||| || Sbjct 55662 CATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACATTGT 55611 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| || | |||||||| || || || |||||||||| || || || || | Sbjct 127584 TTCCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTG 127643 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||||| |||| || |||| ||| |||||||| || | | | || ||| || | Sbjct 127644 AAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTG 127703 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || |||| |||||| ||| ||| || | ||||| || | ||| | Sbjct 127704 GGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAA 127763 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | |||||||| | || || || ||||| |||||||||||||| | ||| Sbjct 127764 CATCAAGAGTAATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 127812 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| || | || ||||| || || || |||||||||| || || || || | Sbjct 117014 CCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 116955 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| || |||| ||| |||||||| || | | | || ||| || || Sbjct 116954 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 116895 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || |||| |||||| ||| ||| || | ||||| || | ||| || Sbjct 116894 ATTCCTTCCTTGTCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAACA 116835 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| | || || || ||||| |||||||||||||| | ||| Sbjct 116834 TCAAGAGTAATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 116788 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| || | || ||||| || || || |||||||||| || || || || | Sbjct 131139 CCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 131080 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| || |||| ||| |||||||| || | | | || ||| || || Sbjct 131079 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 131020 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || |||| |||||| ||| ||| || | ||||| || | ||| || Sbjct 131019 ATTCCTTCCTTGTCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAACA 130960 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| | || || || ||||| |||||||||||||| | ||| Sbjct 130959 TCAAGAGTAATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 130913 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| || | |||||||| ||||| || ||||||||||| || || || || | Sbjct 240315 TTCCACCTCTCAATCTCAAAACTAAGTGAAGAGTTGATTCTTTTTGAATGTTATAGTCTG 240256 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||||| |||| || |||| ||| |||||||| || | | | || ||| || | Sbjct 240255 AAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTG 240196 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| ||||||| |||||| ||| ||| || | ||||| || | ||| | Sbjct 240195 GGATTCCTTCCTTATCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAA 240136 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || ||||||| || || || || | ||||| || || || | ||| Sbjct 240135 CATCGAGAGTGATTGTCTTTCCTGTGAGTGTTTTAACGAAAATTTACAT 240087 >seq21 Length=592296 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||||||| | ||||||||||| | ||| |||||||||| ||||||||||| | Sbjct 450419 CCACCTCTTAATCTCAAAACTAAATGTAAGGTTGATTCTTTTTAAATATTGTAATCTGAA 450360 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || | ||| || |||||||| ||||| | | || ||| || || Sbjct 450359 AGAGTTCTTCCATCTTCTAGTTGTTTTCCTGCAAAAATCAATCTTTATTAATCAGGTGGG 450300 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||||| ||| || ||| ||| || | ||||| || | || || Sbjct 450299 ATTCCTTCCTTATCTTAAATCTTAGCTTTAACAGCGTCAATGGTGTCTGATGGCTCTACA 450240 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || || || || | ||||| ||||| || | ||| Sbjct 450239 TCAAGAGTGATGGTCTTTCCCGTCAGGGTTTTAACAAAAATTTACAT 450193 >seq25 Length=585425 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | ||||||||||| || || |||||||||| || || ||||| | Sbjct 450120 CCTCCTCTAAGTCTCAAAACTAAATGGAGAGTTGATTCTTTTTAGATGTTATAATCTGAA 450061 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| ||||||||||| || ||||| || || | | || ||| || || Sbjct 450060 AGTGTTCTTCCATCTTCCAATTGCTTTCCAGCAAAAATTAATCTTTATTAATCAGGAGGG 450001 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || |||| ||| ||| || ||| || | |||||||| | || || Sbjct 450000 ATTCCTTCCTTGTCTTAAATCTTTGCCTTAACAGCATCGATGGTGTCAGATGGCTCAACA 449941 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || ||||| || | ||||| ||||| || | ||| Sbjct 449940 TCAAGAGTGATGGTCTTGCCTGTGAGGGTTTTAACAAAAATTTACAT 449894 >seq28 Length=561789 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | || |||||||| || || |||||||||| || || ||||| | Sbjct 90771 CCTCCTCTGAGTCTCAATACTAAATGGAGAGTTGATTCTTTTTAGATGTTATAATCTGAA 90830 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| ||||||||||| || ||||| ||||| | | || ||| || || Sbjct 90831 AGAGTTCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTTTATTAATCAGGTGGG 90890 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| |||| ||| ||| || ||| || | ||| ||||| | || || Sbjct 90891 ATTCCTTCTTTGTCTTAAATCTTTGCCTTAACAGCATCGATAGTATCAGATGGCTCAACA 90950 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || || || || | || || ||||| || | ||| Sbjct 90951 TCAAGTGTGATGGTCTTCCCTGTAAGGGTCTTAACAAAAATTTACAT 90997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396275777503851