Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq37 118 9e-22 seq56 109 5e-19 seq28 84.2 2e-11 seq23 82.4 6e-11 >seq37 Length=526299 Score = 118 bits (130), Expect = 9e-22 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 ||||||||||||||||||||||||||||| || || || || || || ||||| Sbjct 191229 AAAATGCAAATATTTGTAAAAACATTAACTGGAAAGACTATCACTCTTGATGTTGAACCA 191288 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 ||||| || | | || | |||| ||||| ||||| || ||| | || ||| Sbjct 191289 TCAGACACAATCGACGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGAT 191348 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 || | ||||| || ||||| || || ||||| |||||| | ||| | | || ||| Sbjct 191349 TAATAAAGACTCATTTTTGCAGGAAAGCAATTAGAAGATGGAAGAACACTTTCAGACTAT 191408 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||| |||||||||| ||||| ||| | || || ||||| |||| || || Sbjct 191409 AACATTTAAAAAGAATCAACTCTCCACTTAGTTTTGAGATTGAGAGGTGGAAT 191461 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 28552 AAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTT 28611 |||||||||||||||||||||||||||| || || || || || || ||||| | Sbjct 194923 AAATGCAAATATTTGTAAAAACATTAACTGGAAAGACTATCACTCTTGATGTTGAACCAT 194982 Query 28612 CAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 |||| || | | || | |||| ||||| ||||| || ||| | || ||| Sbjct 194983 CAGACACAATCGACGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATT 195042 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 || | ||||| || ||||| || || ||||| |||||| | ||| | | || |||| Sbjct 195043 AATAAAGACTCATTTTTGCAGGAAAGCAATTAGAAGATGGAAGAACACTTTCAGACTATA 195102 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| |||||||||| ||||| ||| | || || ||||| |||| || || Sbjct 195103 ACATTTAAAAAGAATCAACTCTCCACTTAGTTTTGAGATTGAGAGGTGGAAT 195154 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 ||||||||||||||||||||||||||||| || || || || || || ||||| Sbjct 197238 AAAATGCAAATATTTGTAAAAACATTAACTGGAAAGACTATCACTCTTGATGTTGAACCA 197297 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 ||||| || | | || | |||| ||||| ||||| || ||| | || ||| Sbjct 197298 TCAGACACAATCGACGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGAT 197357 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 || | ||||| || ||||| || || ||||| |||||| | ||| | | || ||| Sbjct 197358 TAATAAAGACTCATTTTTGCAGGAAAGCAATTAGAAGATGGAAGAACACTTTCAGACTAT 197417 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||| |||||||||| || || ||| | || || ||||| |||| || || Sbjct 197418 AACATTTAAAAAGAATCAACCCTCCACTTAGTTTTGAGATTGAGAGGTGGAAT 197470 >seq56 Length=425007 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||| |||||||||||||||||||||| || || || ||||| || ||||| ||| Sbjct 127812 ATGTAAATATTTGTAAAAACATTAACTGGAAAGACTATTACTCTTGATGTTGAACCATCA 127753 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | |||| ||||| ||||| || ||| | || ||| || Sbjct 127752 GACACAATTGACGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 127693 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 | ||||| || ||||| || || |||| |||||| | ||| | | || |||||| Sbjct 127692 TAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGACTATAAC 127633 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| |||||||||| ||||| ||| | || || ||||| |||| || || Sbjct 127632 ATTTAAAAAGAATCAACTCTCCACTTAGTTTTGAGATTGAGAGGTGGAAT 127583 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||| |||||||||||||||||||||| || || || ||||| || ||||| ||| Sbjct 116788 ATGTAAATATTTGTAAAAACATTAACTGGAAAGACTATTACTCTTGATGTTGAACCATCA 116847 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | |||| ||||| ||||| || ||| | || ||| || Sbjct 116848 GACACAATTGACGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 116907 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 | ||||| || ||||| || || |||| |||||| | ||| | | || |||||| Sbjct 116908 TAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGACTATAAC 116967 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||| |||||||||| ||||| ||| | || || ||||| |||| || Sbjct 116968 ATTTAAAAAGAATCAACTCTCCACTTAGTCTTGAGATTGAGAGGTGG 117014 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||| |||||||||||||||||||||| || || || ||||| || ||||| ||| Sbjct 130913 ATGTAAATATTTGTAAAAACATTAACTGGAAAGACTATTACTCTTGATGTTGAACCATCA 130972 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | |||| ||||| ||||| || ||| | || ||| || Sbjct 130973 GACACAATTGACGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 131032 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 | ||||| || ||||| || || |||| |||||| | ||| | | || |||||| Sbjct 131033 TAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGACTATAAC 131092 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||| |||||||||| ||||| ||| | || || ||||| |||| || Sbjct 131093 ATTTAAAAAGAATCAACTCTCCACTTAGTCTTGAGATTGAGAGGTGG 131139 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||| |||||||||||||||||||||| || || || || || || ||||| || Sbjct 55035 AATGTAAATATTTGTAAAAACATTAACTGGAAAGACTATCACTCTTGATGTTGAACCATC 54976 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | |||| ||||| ||||| || ||| | || ||| | Sbjct 54975 TGACACAATTGACGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTA 54916 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 | | ||||| || ||||| || || |||| |||||| | ||| | | || ||||| Sbjct 54915 ATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGACTATAA 54856 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||| |||||||||| ||||| ||| | || || ||||| |||| || || Sbjct 54855 CATTTAAAAAGAATCAACTCTCCACTTAGTTTTGAGATTGAGAGGTGGAAT 54805 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||| |||||||||||||||||||||| || || || || || || ||||| || Sbjct 55613 AATGTAAATATTTGTAAAAACATTAACTGGAAAGACTATCACTCTTGATGTTGAACCATC 55672 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | |||| ||||| ||||| || ||| | || ||| | Sbjct 55673 TGACACAATTGACGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTA 55732 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 | | ||||| || ||||| || || |||| |||||| | ||| | | || ||||| Sbjct 55733 ATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGACTATAA 55792 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||| |||||||||| ||||| ||| | || || ||||| |||| || || Sbjct 55793 CATTTAAAAAGAATCAACTCTCCACTTAGTTTTGAGATTGAGAGGTGGAAT 55843 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||||||| |||| || || |||||| | || || || || || || ||| ||||| Sbjct 240083 AAAAATGTAAATTTTCGTTAAAACACTCACAGGAAAGACAATCACTCTCGATGTTGAACC 240142 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 ||||| || | | || | |||| ||||| || || || ||| | || || Sbjct 240143 ATCAGACACAATTGACGCTGTCAAAGCTAAAATTTAAGATAAGGAAGGAATCCCACCTGA 240202 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 | || | ||||| || ||||| || || |||| |||||| | ||| | | || || Sbjct 240203 TTAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGACTA 240262 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||||||||| ||||| ||| | || || ||||| |||| || || Sbjct 240263 TAACATTCAAAAAGAATCAACTCTTCACTTAGTTTTGAGATTGAGAGGTGGAAT 240316 >seq28 Length=561789 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||| ||| | || ||| || | ||| | || ||||| || || ||||||||| Sbjct 90904 GACAAAGAAGGAATCCCACCTGATTAATAAAGATTGATTTTTGCTGGAAAGCAATTGGAA 90845 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | |||| | | ||||||||||| |||||||||| ||||| || | ||||| Sbjct 90844 GATGGAAGAACTCTTTCAGATTATAACATCTAAAAAGAATCAACTCTCCATTTAGTATTG 90785 Query 28767 AGATTACGAGGAGG 28780 ||| | ||||||| Sbjct 90784 AGACTCAGAGGAGG 90771 >seq23 Length=588601 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||| |||| ||||| |||||| | || || || || ||||| || ||||| || Sbjct 76677 ATGTAAATCTTTGTTAAAACACTCACAGGAAAGACAATTACTCTTGATGTTGAACCATCT 76736 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | | || |||||| ||||| || ||| | || ||| || Sbjct 76737 GATACTATTGATGCTGTTAAAGCTAAAATCTAAGACAAGGAAGGAATCCCACCCGATTAA 76796 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 | |||||||||||||| || ||| |||| ||||| | ||| | | || |||||| Sbjct 76797 TAAAGACTTATCTTTGCAGGAAAATAATTAGAAGACGGAAGAACACTTTCAGACTATAAC 76856 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || |||| ||||| || || ||| | || || |||||| |||| || || Sbjct 76857 ATCTAAAAGGAATCAACACTCCACTTAGTTTTGAGATTAAGAGGTGGAAT 76906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425401984750797