Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq10 194 8e-45 seq4 176 2e-39 >seq10 Length=733974 Score = 194 bits (214), Expect = 8e-45 Identities = 336/481 (70%), Gaps = 12/481 (2%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATC--AG-CATTTTGCTCAACTTTCTCCATAAATAAATC 25944 |||||| || | |||| |||||| || ||| || |||| | | ||| |||||||| Sbjct 165927 ATTTGGGCACATTAAAGTCCAATCTTAGTCATCTTT---AACTCTTTACATGAATAAATC 165871 Query 25945 TGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTT 26004 ||| ||||||| | ||||||||||||| ||||| ||||||| |||| ||||| || Sbjct 165870 TGGTATCCACAAACCTAAAAATAAATCTCTTGCTCTTTATTCTTCTATTCCATGATTTTT 165811 Query 26005 TTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACT 26064 | ||| | ||||||| | |||||| |||||||| || ||||| ||||||||| Sbjct 165810 TCTTAATTATAAGAAACTTATAATATCACTATGCCATGGCTCCAAATATATAGCAAAAGA 165751 Query 26065 ACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAA 26124 |||||||||||| || || |||| |||||| ||||| || || ||||| ||||| || || Sbjct 165750 ACCTTTTCTTTTACCGCCTCCTTAATCTACATATCTAGCTGTATCATTAAAAACCTTTAA 165691 Query 26125 CATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCT 26184 |||||| ||||| ||| | || ||| || || | ||| | || ||||| Sbjct 165690 CATTGGTACTAAACCATTACTAATTCCATTAGTTCCTCTAATATAACTATCTTAAGATCT 165631 Query 26185 AATATCGTGAGCA-TGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA--ATC 26241 || | | || | ||| || ||||| || || |||| ||| ||||| | Sbjct 165630 TATTTTTGAAACACTTAAT-CCTATTCCTCCTGCTGATTTACTAATTAAGGCACATCTTT 165572 Query 26242 TGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGA 26301 | ||| || || ||||||| | ||| |||| || ||| |||| |||||||| || Sbjct 165571 TTAAA--GTTTCATAAATTCCATCTATTGAATCATCTACCATATCTAACAAAAAACATGA 165514 Query 26302 AGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATA 26361 || | || | || || || || ||||||||||| || || ||||||||| || | Sbjct 165513 TGACATTTAAGGATAAGGAGTACCACTGTTAAATAATGTTGGAGTTGCATGAGTAAAAAA 165454 Query 26362 T 26362 | Sbjct 165453 T 165453 Score = 100 bits (110), Expect = 1e-16 Identities = 138/189 (73%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 25003 ATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGG 25062 ||||||| | |||||||||| ||| ||||||||| | ||| || | || |||| Sbjct 166776 ATTTATGCATACGAATTCTCCAGCCAATACTCTTCTTGTATATATATTAGTTGTATATGG 166717 Query 25063 TTCAAAACATTCATTATTTCCTAAGATTTGAG-AAGTAGATGCTGTTGGCATTAATGCTA 25121 ||| || ||||||||||| |||| || || || ||||| ||||||||| ||| | Sbjct 166716 TTCGAATGATTCATTATTT-TAAAGAATTTAGCTCGTTGATGCAGTTGGCATTGGTGCAA 166658 Query 25122 TTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATCTA 25181 |||||| |||||||||| |||| ||| | ||| | | |||||| || |||||| | Sbjct 166657 TTAATAAAGAATTTCTCATTCCATGTTTCATAATATTCTATTTTAAAGTAGTCCAATC-A 166599 Query 25182 AATTATTAT 25190 || ||||| Sbjct 166598 TATAATTAT 166590 >seq4 Length=867223 Score = 176 bits (194), Expect = 2e-39 Identities = 431/629 (69%), Gaps = 27/629 (4%) Strand=Plus/Minus Query 25924 AACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCAT 25983 |||| | | ||| ||||||||||| ||||||| | ||||||||||||| ||||| Sbjct 329642 AACTCTTTACATGAATAAATCTGGGATCCACAAACCTAAAAATAAATCTCTTGCTCTTTA 329583 Query 25984 TTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGG 26043 ||||||| |||| ||||||||| | | | ||||||| | ||| || |||||||| Sbjct 329582 TTCTTCTATTCCATGATTCTTTCTCAATTATAAGAAACTTATAATGTCACTATGCCATGG 329523 Query 26044 TTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGC 26103 ||| ||||||||||||||| ||||||||| || || || |||| |||||| ||||| || Sbjct 329522 TTCCAAATAGATAGCAAAAGAACCTTTTCTCTTACCACCTCCTTAATCTACATATCTAGC 329463 Query 26104 AGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTG-TGCTAT 26162 || ||||| || || || |||||||| ||||| ||| | | ||| || | | || | Sbjct 329462 TGTGTCATTAAACACCTTTAACATTGGCACTAAACCATTACTTATTCCATTAGTTCCTCT 329403 Query 26163 GA---ATCTTGGATCCTGTCGATCTAATATCGTGA-GCA-TGAATACCGATTCCACCAGC 26217 || | || || || ||||| || | ||| || | ||| || || || ||||| Sbjct 329402 GATATAACT---AT-CTTAAGATCTGATCT-TTGATACACTTAAT-CCTATCCCTCCAGC 329349 Query 26218 CCATTTTGAAATAGCTGCACAATCT-GAAACTGTATCGAAAATTCCTTTTATGCTATCAC 26276 | |||| || |||| |||| | || || | || || | ||| |||| Sbjct 329348 CGATTTACTTATTAAAGCAC-ATCTCTTCAGAGTTTCATATATACCATCTATTGAATCAT 329290 Query 26277 CTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATA 26336 | ||| |||| | |||||| || || | || | || || || || ||||||| Sbjct 329289 CAACCATATCTAAAAGAAAACATGATGACATTTAAGGATAAGGAGTACCACTGTTAAATA 329230 Query 26337 ATGTCGGTGTAGCATGAGTATAATA--TCCTTCAC-TCAAAGCTGTATAAGTTTCAAGAA 26393 |||| || || ||||||||| |||| | | || | ||| || |||||||| || | Sbjct 329229 ATGTTGGAGTGGCATGAGTAAAATACTTTTATGACATTAAA--TG-ATAAGTTTAAAAGA 329173 Query 26394 CTTCATCGATATTGTAATTACTAACTTCAATAGCT-GTTCTTAACCACATATATTGAGGT 26452 || || | || | ||| || | |||| ||| ||| | | | |||| ||| Sbjct 329172 CTGATTCCAAATCATCTTTATGAATTCCAAT-GCTAACTCTCATTAATAATTATTATGGT 329114 Query 26453 CGTTCAATTACATTATTTTCCGCATCTCTAATCAAATAAGATTTTTCTAAAGTTTTCAAT 26512 | ||| ||| || ||| | ||||| | | |||||| | |||||||||| || || Sbjct 329113 CTTTCTATT-GGTTTTTTAC--CATCTTTTAGTAAATAACTTCTTTCTAAAGTCTTAAAA 329057 Query 26513 CCAAAATAATCATGATTGA-AATCTCTTT 26540 |||||| | |||| ||||| ||||||||| Sbjct 329056 CCAAAAAAGTCAT-ATTGATAATCTCTTT 329029 Score = 129 bits (142), Expect = 3e-25 Identities = 238/343 (69%), Gaps = 7/343 (2%) Strand=Plus/Minus Query 24857 GATATATCGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTT 24916 ||||| || || | ||||| ||| | ||| || | | ||||||| | | |||||| Sbjct 330673 GATATCTCCCAAACGGTTTTATATAATTATTTAATATTATTTGGAATTTCTTCTATATTT 330614 Query 24917 TGAACTGATCCATTTTCTCTCAATAGATTCAATCTCATATTCGGTGTCCAAAGATT-AAT 24975 | | ||| ||||| | | | || || | | || | |||||||| | ||| ||| Sbjct 330613 TAGATTGAACCATTATTCATGATTAATTTGTTTTTAATTTATGGTGTCCATAAATTCAAT 330554 Query 24976 TTTTTCAAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCT 25035 | | |||| ||| || | || ||||||| | |||||||||| ||| ||||| Sbjct 330553 TCTATCAA-ATCATCAACTAGATGAGGATTTATGCATACGAATTCTCCAGCCAATACTCT 330495 Query 25036 TCTT--ATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGA 25093 |||| || |||| || | ||| |||||||||| ||||||||||| | |||| | Sbjct 330494 TCTTGTATAGATA--TTAGTAGTATATGGTTCAAATGATTCATTATTTTAAAGAATTTAA 330437 Query 25094 GAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACA 25153 || |||||||||||||| || || |||| |||||||||| ||||||||| | | Sbjct 330436 CTTGTTGATGCTGTTGGCATAGGCGCAATCAATAAAGAATTTCTCATACCATATTTCATA 330377 Query 25154 ATCTCTTGTTTTAATTTATCCCAATCTAAATTATTATCTAACT 25196 || | || |||||| ||| |||||| | || ||||| |||| Sbjct 330376 ATATTTTATTTTAAAGTATTCCAATC-ATATAATTATGGAACT 330335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253038325428725