Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq47 185 1e-41 seq67 141 1e-28 >seq47 Length=473039 Score = 185 bits (204), Expect = 1e-41 Identities = 505/755 (67%), Gaps = 25/755 (3%) Strand=Plus/Plus Query 138182 TACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATG 138241 |||| |||| ||||||| ||||||||||| |||||||||||||| | ||||| ||||| Sbjct 238849 TACAGCAATTGGACCTAATCCAGGACCTCCTCCTCCATGTGGAATTGAAAATGTTTTATG 238908 Query 138242 TAAATTTAGATGACATACATCTGCACCATAG-TCACATGGTTTTGCTAGA-CCTACCTGT 138299 | ||| | ||||||||||| || || ||| | | || | || | || || | | Sbjct 238909 CAGATTCAAGTGACATACATCAGC-CCCTAGATATCCAGGAGAAG-TATATCCAACTTAT 238966 Query 138300 GCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACAT 138359 ||||| | ||| || ||||| | ||| || ||| |||| ||||||| | ||| || Sbjct 238967 GCATTCATATTAGCTCCATCCATATACACTAAACCTCCATGATCATGAATCA-ATTAAAT 239025 Query 138360 ATCTGTCTGATGTTT--GTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATAC 138417 | ||| ||||| |||| | || |||| ||| |||||||| |||||||| |||| Sbjct 239026 GATTTTCT-TTGTTTAATCTTCATAAACTCCATAAGTTGATGGATAAGTAATCATGATAC 239084 Query 138418 ATGAGAGTTCAAATGTATTCATG---ATTG-CTTTCTTCTCTAGATCTTTGATGTCTATG 138473 | || | | | |||||| ||| |||||| | | ||| | || | Sbjct 239085 A----AGCCAAGTTTTTTTCATGTTCTTTGATTTTCTTATTCAAATCAGCCAAATCGACA 239140 Query 138474 TTGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCA 138533 | |||||| || ||| || || |||||| || | ||| || | ||| ||| |||| Sbjct 239141 TAACCATCA--ATAACA-TTTACTGGTACAACATTTAATCCAGCAAGGACAGCAGAAGCA 239197 Query 138534 GGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATCTCCTGAT 138593 ||||||||||||||||| || ||| || | ||| | |||||| | | | || || Sbjct 239198 GGATTAGTTCCATGTGCAGATATTGGGATTAAACAAATATTTCTGTCTTTTTAACC--AT 239255 Query 138594 CCTTGA--TGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGT 138651 | | | |||||| | ||| |||| |||| ||| || || | || || | Sbjct 239256 TCATTATGTGATATTTTCTGATGCACAACAAACCTGTATATTCTCCTTATGCACCACTAT 239315 Query 138652 TAGGTTGTAATGATATAGAATCAAAACCTGTGATATCACATAACCATTTCTGTAAGTCAT 138711 |||| ||| || |||| || | || ||||| ||||||||||| | | | || Sbjct 239316 TAGGCATTAAGGAGATAGCTTCCATTTGAGTAATATCGCATAACCATTTTTCAACATTAT 239375 Query 138712 CTATTATCTTTTGATAACCCATGGT-CTGTATCATAGGTGTATGTGGATGCACGTTGGCA 138770 | ||| | || |||||| ||| | || | ||||| | |||||| | | || Sbjct 239376 CAGTTAATTCTTAATAACCTTAGGTGCAAGAT-AGAGGTGAAAATGGATGTAGTTAGGAG 239434 Query 138771 AATTCTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATTTAGTTTCATTGTGCAACTA 138830 || ||| |||| ||||||| || | | | ||||| |||||| || |||||| Sbjct 239435 AACCCTTGGAATGAAACAGGCAACATAAAGGAAGTAGGATTTAATTTCATAGTACAACTA 239494 Query 138831 CCAAGTGGAACCATACCATTTACTAATGAGAAATCTTTAGAGCATAACTCATAGATATAT 138890 || | || || |||| ||| ||||||||| |||||| | | ||| | | ||| ||| Sbjct 239495 CCTAATGAAATCATAGACTTTGCTAATGAGATATCTTTCTATCTTAAATAGTTGATGTAT 239554 Query 138891 CTCATCATGTCAGTTTCACTGTGATACTTATTGAA 138925 |||| ||| ||||||||||| || | ||||||| Sbjct 239555 CTCAACATTTCAGTTTCACTATGTAAAGTATTGAA 239589 Score = 141 bits (156), Expect = 1e-28 Identities = 173/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 139847 ATATGCTAACAGCATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGC 139906 || ||| || | |||||| ||| |||| |||||||||||||| |||| ||| || |||| Sbjct 240514 ATTTGCCAAGAACATTGCTTCTCCTGCAGCAGTTGCTTCATCCAATAAAGAAGCATTTGA 240573 Query 139907 TATTGGTAATCCTGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCT 139966 || | |||||| | ||| ||||| | |||| |||||| ||||||||||||||| Sbjct 240574 TACATCCATTCCTGTCAATTCAGTGATTACTGTTTAAAAATTGATTAAAGCTTCCAATCT 240633 Query 139967 TCCCTGAGATATCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAG 140026 || | ||| |||||||||| || ||||| ||||| || ||||| | ||| | ||||| Sbjct 240634 ACCTTAAGAAATCTCAGCTTAGTATGGAGTATAAGACGTATACCATCCAGGGTCTTCAAG 240693 Query 140027 AACGTTTCGCTGTATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTATAA 140082 || |||| || || ||||| || ||||| || |||| |||||||| Sbjct 240694 TACATTTCTTAAGATTACGTATGGTGTGTGAGTGCCATAATACCCTTAACCTATAA 240749 >seq67 Length=382826 Score = 141 bits (156), Expect = 1e-28 Identities = 487/742 (66%), Gaps = 23/742 (3%) Strand=Plus/Minus Query 138182 TACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATG 138241 |||| |||| ||||||| || ||||| || |||||||||||||| ||||||| ||||| Sbjct 174230 TACAGCAATTGGACCTAATCCTGGACCACCTCCTCCATGTGGAATTGAGAATGTTTTATG 174171 Query 138242 TAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGA-CCTACCTGTG 138300 | ||||| |||||||||||| || || | || || | || | || || | || Sbjct 174170 AAGATTTAAATGACATACATCAGCTCCCAGATAACCAGGAGAAG-TATATCCAACTTATG 174112 Query 138301 CATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACAT- 138359 |||| | ||| || ||||| | || || || |||| ||||||| | ||| || Sbjct 174111 CATTCATATTAGCTCCATCCATGTACACTAAGCCTCCATGATCATGAATCA-ATTAAATG 174053 Query 138360 ATCTGTCTGATGTTTGT-TTCAAATACACCATGAGTCGATGGATATGTAATCATAATACA 138418 |||| ||| | || | |||| | || |||| || |||||||| |||||||||||||| Sbjct 174052 ATCT-TCTTAGTTTAATCTTCATAAACTCCATATGTTGATGGATAAGTAATCATAATACA 173994 Query 138419 TGAGAGTTCAAATGTATTCATG---ATTG-CTTTCTTCTCTAGATCTTTGATGTCTATGT 138474 || | || | |||||| ||| |||| | | | ||| | | || | | Sbjct 173993 TGCCA----AAGCCTTTTCATGCTCTTTGATTTTCCTATTCAAATCAGTCAAATCAACAT 173938 Query 138475 TGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAG 138534 ||||| || ||| || || |||||| || | ||| || | ||| || ||||| Sbjct 173937 AACCATC--TATAACA-TTAACTGGTACAACGTTTAATCCAGCAAGGACAGCTGAAGCAG 173881 Query 138535 GATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATCTCCTGATC 138594 |||| || |||||||| || ||| || | ||| | |||||| | | | || || Sbjct 173880 GATTGGTACCATGTGCAGATATTGGAATTAAACAAATATTTCTATCCTTTTGGCC--ATT 173823 Query 138595 CTTGA--TGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTT 138652 | ||| |||||| | ||| || | |||| ||| || || | || || || Sbjct 173822 CATGATGTGATATTTTCTGATACACAATAAACCTGTATATTCTCCTTATGCACCACTATT 173763 Query 138653 AGGTTGTAATGATATAGAATCAAAACCTGTGATATCACATAACCATTTCTGTAAGTCATC 138712 ||| ||| || || | || | ||| ||||||||||||||||| | | | ||| Sbjct 173762 AGGCATTAAAGAGATTGCTTCCATTTATGTAATATCACATAACCATTTTTCAACATTATC 173703 Query 138713 TATTATCTTTTGATAACC-CATGGTCTGTATCATAGGTGTATGTGGATGCACGTTGGCAA 138771 | | | || ||| || | | | || | ||||| |||||| | | | | Sbjct 173702 AGTCAATTCTTAATATCCTTAAGTGCAAGAT-AAAGGTGAGAATGGATGTAGCTAAGAGA 173644 Query 138772 ATTCTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATTTAGTTTCATTGTGCAACTAC 138831 || ||| | || ||||||| || | | | ||||| |||||| || ||||||| Sbjct 173643 ATCCTTAAAAGGAAACAGGCAACATAAAGGAAGTAGGATTTAATTTCATAGTACAACTAC 173584 Query 138832 CAAGTGGAACCATACCATTTACTAATGAGAAATCTTTAGAGCATAACTCATAGATATATC 138891 | | || || |||| ||| |||| |||| ||||| || | ||| | || || |||| Sbjct 173583 CTAATGAAATCATAGACTTTGCTAAGGAGATGTCTTTGGATCTTAAATAATTAATGTATC 173524 Query 138892 TCATCATGTCAGTTTCACTGTG 138913 ||| ||| |||||||| || || Sbjct 173523 TCAACATTTCAGTTTCGCTATG 173502 Score = 118 bits (130), Expect = 1e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 139847 ATATGCTAACAGCATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGC 139906 || ||| || | ||| || ||| ||||||| ||||||||||| |||| |||||| || | Sbjct 172565 ATTTGCCAAGAACATCGCTTCTCCTGCTGCTGTTGCTTCATCCAATAAAGATGCATTAGA 172506 Query 139907 TATTGGTAATCCTGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCT 139966 || | ||| || | ||| ||||| | |||| ||||| | ||||||||| |||| Sbjct 172505 TACATCCATTCCAGTCAATTCAGTGATTACAGTTTAATAATTTAGTAAAGCTTCTAATCG 172446 Query 139967 TCCCTGAGATATCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAG 140026 |||| || |||||||| || || || || || ||||| ||||| | ||| | ||||| Sbjct 172445 ACCCTATGAAATCTCAGCCTGGTATGGTGTATAGGATGTATACCATCCAGGGTCTTCAAG 172386 Query 140027 AACGTTTC 140034 ||||||| Sbjct 172385 TACGTTTC 172378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578994470048360