Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq111 82.4 1e-10 >seq111 Length=285051 Score = 82.4 bits (90), Expect = 1e-10 Identities = 196/297 (66%), Gaps = 12/297 (4%) Strand=Plus/Plus Query 166049 TTTGTTGGTACAAATAATATAGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTA 166108 ||||||||| | |||||||| |||||| ||| | ||| | ||||||| ||| Sbjct 61862 TTTGTTGGTTCCAATAATATTAATTTACTTTTACCAAAAGGTTAGTTTGGTAGTAGAGCT 61921 Query 166109 GAAGGAGGTAAAGATTCTGCTGCATCAAGATATATTTATACCAAACCACATAAAATATTA 166168 || ||||||||| ||| | |||||||||||| ||| | | ||||||| Sbjct 61922 ATGGGTGGTAAAGATCATGCATCTGCAAGATATATTTCTACAGCTCTAAATAAAATTACT 61981 Query 166169 AAATATATATTTAGAGAAGAAGATGACCCTATTTTAAATTAT-------ACTGTTGA--- 166218 | | |||||||| |||| ||||||| | | | || || ||| || | || Sbjct 61982 AGACATATATTTCCAGAATAAGATGATCATTTATTGAAGTATTTGGAAGACGATGGATAG 62041 Query 166219 --GGGTGAACCTATTCATTTTATTCCAGTAATCCCATTAATTTTAATTAATGGTTCTATT 166276 || |||||| | ||| | |||| | || ||| | | |||| | ||||| || Sbjct 62042 ATGGTTGAACCAGATTATTATGTTCCTATTATACCAATGAGTTTAGTAAATGGAGCTGAA 62101 Query 166277 GGTATTGGAACAGGATGGTCATGTTTTATACCTCAATATAATCCTTTAGAATTAATT 166333 |||||||| || || |||||| | ||| | | ||||||||| | |||||| || Sbjct 62102 GGTATTGGTACTGGTTGGTCAACATCTATTCAAAATTATAATCCTATTGAATTAGTT 62158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632485306976840