Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq25 116 3e-21 seq28 111 1e-19 seq143 98.7 9e-16 seq56 98.7 9e-16 >seq25 Length=585425 Score = 116 bits (128), Expect = 3e-21 Identities = 173/243 (71%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| | || ||| ||||||| || || || || || || || || || || || |||| | Sbjct 449894 ATGTAAATTTTTGTTAAAACCCTCACAGGCAAGACCATCACTCTTGATGTTGA-GCCATC 449952 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||| ||||||| |||||||| ||||| ||| | Sbjct 449953 TGACACCATCGATGCTGTTAAGGCAAAGATTTAAGACAAGGAAGGAATCCCTCCTGATTA 450012 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 | || | || || ||||| || || || |||| ||| |||| | ||||||||||| Sbjct 450013 ATAAAGATTAATTTTTGCTGGAAAGCAATTGGAAGATGGAAGAACACTTTCAGATTATAA 450072 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 ||| |||| ||||| || || || || || ||| || | | ||||| || | ||||| Sbjct 450073 CATCTAAAAAGAATCAACTCTCCATTTAGTTTTGAGACTTAGAGGAGGTGGTATGGAGCC 450132 Query 24943 AAC 24945 ||| Sbjct 450133 AAC 450135 >seq28 Length=561789 Score = 111 bits (122), Expect = 1e-19 Identities = 172/243 (71%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| | || ||| |||| || || || || || || || || || || || || |||| | Sbjct 90997 ATGTAAATTTTTGTTAAGACCCTTACAGGGAAGACCATCACACTTGATGTTGA-GCCATC 90939 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || |||||| |||||||||||||||| || || ||| | Sbjct 90938 TGATACTATCGATGCTGTTAAGGCAAAGATTTAAGACAAAGAAGGAATCCCACCTGATTA 90879 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 | || | ||||| ||||| || || || |||| ||| |||| | ||||||||||| Sbjct 90878 ATAAAGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGAAGAACTCTTTCAGATTATAA 90819 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 ||| |||| ||||| || || || || || ||| || | | ||||| || | ||||| Sbjct 90818 CATCTAAAAAGAATCAACTCTCCATTTAGTATTGAGACTCAGAGGAGGTGGTATGGAGCC 90759 Query 24943 AAC 24945 ||| Sbjct 90758 AAC 90756 >seq143 Length=219650 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || |||| || ||||| || || || || || || |||| | Sbjct 171684 ATGCAAATTTTTGTCAAGACCTTAACTGGAAAAACAATCACACTTGATGTCGA-GCCATC 171742 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || ||| || || ||||||||||||||||||| || ||| | Sbjct 171743 AGACACAATTGACGCTGTCAAAGCTAAAATTTAAGACAAAGAAGGAATACCACCTGATTA 171802 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | || ||||| |||||| | | || ||| |||| | ||||| ||||| Sbjct 171803 GTAAAGGCTTATTTTTGCAGGGAAATAATTAGAAGATGGAAGAACTCTTTCAGACTATAA 171862 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||||| || || || || || || | ||| | ||||| Sbjct 171863 TATCTAAAAGGAATCAACCCTTCATTTAGTTTTAAGGTTGAGAGGAGG 171910 >seq56 Length=425007 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| | || || ||||||| || || || || || || || ||||| || ||| | | Sbjct 240087 ATGTAAATTTTCGTTAAAACACTCACAGGAAAGACAATCACTCTCGATGTTGAACCATCA 240146 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| || || |||| || |||||||| || || ||| || Sbjct 240147 GACACAATTGACGCTGTCAAAGCTAAAATTTAAGATAAGGAAGGAATCCCACCTGATTAA 240206 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || ||||| || || | | || ||| |||| | ||||| |||||| Sbjct 240207 TAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGACTATAAC 240266 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||| ||||| || || ||||| || ||| ||||| | || || Sbjct 240267 ATTCAAAAAGAATCAACTCTTCACTTAGTTTTGAGATTGAGAGGTGG 240313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894546320040