Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25]
543 sequences; 68,016,588 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq25 116 3e-21
seq28 111 1e-19
seq143 98.7 9e-16
seq56 98.7 9e-16
>seq25
Length=585425
Score = 116 bits (128), Expect = 3e-21
Identities = 173/243 (71%), Gaps = 2/243 (1%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||| | || ||| ||||||| || || || || || || || || || || || |||| |
Sbjct 449894 ATGTAAATTTTTGTTAAAACCCTCACAGGCAAGACCATCACTCTTGATGTTGA-GCCATC 449952
Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || | || || |||||| ||||||| |||||||| ||||| ||| |
Sbjct 449953 TGACACCATCGATGCTGTTAAGGCAAAGATTTAAGACAAGGAAGGAATCCCTCCTGATTA 450012
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
| || | || || ||||| || || || |||| ||| |||| | |||||||||||
Sbjct 450013 ATAAAGATTAATTTTTGCTGGAAAGCAATTGGAAGATGGAAGAACACTTTCAGATTATAA 450072
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942
||| |||| ||||| || || || || || ||| || | | ||||| || | |||||
Sbjct 450073 CATCTAAAAAGAATCAACTCTCCATTTAGTTTTGAGACTTAGAGGAGGTGGTATGGAGCC 450132
Query 24943 AAC 24945
|||
Sbjct 450133 AAC 450135
>seq28
Length=561789
Score = 111 bits (122), Expect = 1e-19
Identities = 172/243 (71%), Gaps = 2/243 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||| | || ||| |||| || || || || || || || || || || || || |||| |
Sbjct 90997 ATGTAAATTTTTGTTAAGACCCTTACAGGGAAGACCATCACACTTGATGTTGA-GCCATC 90939
Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || | || | || || |||||| |||||||||||||||| || || ||| |
Sbjct 90938 TGATACTATCGATGCTGTTAAGGCAAAGATTTAAGACAAAGAAGGAATCCCACCTGATTA 90879
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
| || | ||||| ||||| || || || |||| ||| |||| | |||||||||||
Sbjct 90878 ATAAAGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGAAGAACTCTTTCAGATTATAA 90819
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942
||| |||| ||||| || || || || || ||| || | | ||||| || | |||||
Sbjct 90818 CATCTAAAAAGAATCAACTCTCCATTTAGTATTGAGACTCAGAGGAGGTGGTATGGAGCC 90759
Query 24943 AAC 24945
|||
Sbjct 90758 AAC 90756
>seq143
Length=219650
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| | || || |||| || ||||| || || || || || || |||| |
Sbjct 171684 ATGCAAATTTTTGTCAAGACCTTAACTGGAAAAACAATCACACTTGATGTCGA-GCCATC 171742
Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||||| | || | || ||| || || ||||||||||||||||||| || ||| |
Sbjct 171743 AGACACAATTGACGCTGTCAAAGCTAAAATTTAAGACAAAGAAGGAATACCACCTGATTA 171802
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | | || ||||| |||||| | | || ||| |||| | ||||| |||||
Sbjct 171803 GTAAAGGCTTATTTTTGCAGGGAAATAATTAGAAGATGGAAGAACTCTTTCAGACTATAA 171862
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| |||||||||| || || || || || || | ||| | |||||
Sbjct 171863 TATCTAAAAGGAATCAACCCTTCATTTAGTTTTAAGGTTGAGAGGAGG 171910
>seq56
Length=425007
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||| | || || ||||||| || || || || || || || ||||| || ||| | |
Sbjct 240087 ATGTAAATTTTCGTTAAAACACTCACAGGAAAGACAATCACTCTCGATGTTGAACCATCA 240146
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | || | || ||| || || |||| || |||||||| || || ||| ||
Sbjct 240147 GACACAATTGACGCTGTCAAAGCTAAAATTTAAGATAAGGAAGGAATCCCACCTGATTAA 240206
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | | || ||||| || || | | || ||| |||| | ||||| ||||||
Sbjct 240207 TAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGACTATAAC 240266
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|||||||| ||||| || || ||||| || ||| ||||| | || ||
Sbjct 240267 ATTCAAAAAGAATCAACTCTTCACTTAGTTTTGAGATTGAGAGGTGG 240313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449894546320040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |