Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq37 89.7 4e-13 >seq37 Length=526299 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||||||||| ||||| ||||| || || || || || | || || || Sbjct 191229 AAAATGCAAATATTTGTAAAAACATTAACTGGAAAGACTATCACTCTTGATGTTGAACCA 191288 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || ||| | || ||| || ||| ||||| ||||| | || ||| Sbjct 191289 TCAGACACAATCGACGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGAT 191348 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||||||| |||| ||| || || || | || |||| |||||| | | || || Sbjct 191349 TAATAAAGACTCATTTTTGCAGGAAAGCAATTAGAAGATGGAAGAACACTTTCAGACTAT 191408 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||| |||||||||| || | ||| | || || ||| || |||| |||| Sbjct 191409 AACATTTAAAAAGAATCAACTCTCCACTTAGTTTTGAGATTGAGAGGTGGAA 191460 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||||||||| ||||| ||||| || || || || || | || || || Sbjct 197238 AAAATGCAAATATTTGTAAAAACATTAACTGGAAAGACTATCACTCTTGATGTTGAACCA 197297 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || ||| | || ||| || ||| ||||| ||||| | || ||| Sbjct 197298 TCAGACACAATCGACGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGAT 197357 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||||||| |||| ||| || || || | || |||| |||||| | | || || Sbjct 197358 TAATAAAGACTCATTTTTGCAGGAAAGCAATTAGAAGATGGAAGAACACTTTCAGACTAT 197417 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||| |||||||||| || | ||| | || || ||| || |||| |||| Sbjct 197418 AACATTTAAAAAGAATCAACCCTCCACTTAGTTTTGAGATTGAGAGGTGGAA 197469 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 110271 AAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTG 110330 |||||||||||||||| ||||| ||||| || || || || || | || || || Sbjct 194923 AAATGCAAATATTTGTAAAAACATTAACTGGAAAGACTATCACTCTTGATGTTGAACCAT 194982 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 || || ||| | || ||| || ||| ||||| ||||| | || ||| Sbjct 194983 CAGACACAATCGACGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATT 195042 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 || ||||||| |||| ||| || || || | || |||| |||||| | | || || | Sbjct 195043 AATAAAGACTCATTTTTGCAGGAAAGCAATTAGAAGATGGAAGAACACTTTCAGACTATA 195102 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| |||||||||| || | ||| | || || ||| || |||| |||| Sbjct 195103 ACATTTAAAAAGAATCAACTCTCCACTTAGTTTTGAGATTGAGAGGTGGAA 195153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412838867891699