Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq74 89.7 7e-13 seq111 87.8 2e-12 seq149 82.4 1e-10 seq43 82.4 1e-10 >seq74 Length=372420 Score = 89.7 bits (98), Expect = 7e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 51956 AACATTTAAAATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGA 52015 |||||| | | ||||||| || || || | |||| ||||| ||||||||||| ||||| Sbjct 324446 AACATTCAGATTGAATTTATCTGTGTGTACACCATACAATGCAGATTTTGATGGAGATGA 324505 Query 52016 AATGAATTTACATGTTCCTCAATCATATGGAGCTACTGCTGAATTACAA 52064 ||||||| | || |||||| |||| |||| | | | ||| |||||| || Sbjct 324506 AATGAATATGCACGTTCCTTAATCTTATGAAACCATTGCAGAATTAAAA 324554 >seq111 Length=285051 Score = 87.8 bits (96), Expect = 2e-12 Identities = 197/297 (66%), Gaps = 12/297 (4%) Strand=Plus/Plus Query 163097 TTTGTTGGTACAAATAATATAGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTA 163156 ||||||||| | |||||||| |||||| ||| | ||| | ||||||| ||| Sbjct 61862 TTTGTTGGTTCCAATAATATTAATTTACTTTTACCAAAAGGTTAGTTTGGTAGTAGAGCT 61921 Query 163157 GAAGGAGGTAAAGATTCTGCGGCATCAAGATATATTTATACCAAACCAAATAAAATATTA 163216 || ||||||||| ||| | |||||||||||| ||| | ||||||||| Sbjct 61922 ATGGGTGGTAAAGATCATGCATCTGCAAGATATATTTCTACAGCTCTAAATAAAATTACT 61981 Query 163217 AAATATATATTTAGAGAAGAAGATGACCCTATTTTAAATTAT-------ACTGTTGA--- 163266 | | |||||||| |||| ||||||| | | | || || ||| || | || Sbjct 61982 AGACATATATTTCCAGAATAAGATGATCATTTATTGAAGTATTTGGAAGACGATGGATAG 62041 Query 163267 --GGGTGAACCTGTTCATTTTATCCCAGTGATTCCATTAATTTTAATTAATGGTTCTATT 163324 || |||||| | | ||| | | || | || ||| | | |||| | ||||| || Sbjct 62042 ATGGTTGAACCAGATTATTATGTTCCTATTATACCAATGAGTTTAGTAAATGGAGCTGAA 62101 Query 163325 GGTATTGGAACAGGATGGTCATGTTTTATCCCTCAATATAATCCTTTGGAATTAATT 163381 |||||||| || || |||||| | ||| | | ||||||||| | |||||| || Sbjct 62102 GGTATTGGTACTGGTTGGTCAACATCTATTCAAAATTATAATCCTATTGAATTAGTT 62158 >seq149 Length=213610 Score = 82.4 bits (90), Expect = 1e-10 Identities = 67/79 (85%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 193518 GATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATTAATCCAAATTGTATT 193577 |||||||||||| ||| || ||||||||||| |||||||||||||||||| | || ||| Sbjct 91969 GATATGCCATTTTCAGAATCTGGTATGGTACCGGATATTATTATTAATCCACA-TGCATT 92027 Query 193578 -CCATCCAGAATGACCATT 193595 || || |||||||| ||| Sbjct 92028 CCCTTCTAGAATGACAATT 92046 >seq43 Length=496757 Score = 82.4 bits (90), Expect = 1e-10 Identities = 123/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 193437 TTACGTATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTG 193495 ||| | ||||| |||| || || ||||||||| || |||| ||||||| ||||| Sbjct 488044 TTAAGAATACCATAAATTGGTGACAAATTTTGTAGTAGACATGGAT-AAAAAGGTACTTG 487986 Query 193496 TGGTATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATAT 193555 || |||| ||| | |||| ||| | |||||||| |||| || || || | Sbjct 487985 CGGAATGACCTATCGATAAGAGGATTTACCATTTACTTTAACAGGAATATCTCCTGACTT 487926 Query 193556 TATTATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTATT 193607 | || |||||| ||||||||||||| |||||||| ||| | |||||||| Sbjct 487925 AACAATCAATCCACATTGTATTCCATCAAGAATGACTATTGGTAAAATTATT 487874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635173288732040