Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq74 104 3e-17 seq43 95.1 2e-14 >seq74 Length=372420 Score = 104 bits (114), Expect = 3e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 53047 AACTTTAAGGATGAATTTAGCTATGGCTAAAGCTTACAATGCAGATTTTGATGGAGATGA 53106 ||| || || |||||||| || || || | | |||||||||||||||||||||||||| Sbjct 324446 AACATTCAGATTGAATTTATCTGTGTGTACACCATACAATGCAGATTTTGATGGAGATGA 324505 Query 53107 AATGAATTTACATATTCCTCAGTCTTATGAAGCTACTGCAGAATTAA 53153 ||||||| | || ||||| | ||||||||| | | ||||||||||| Sbjct 324506 AATGAATATGCACGTTCCTTAATCTTATGAAACCATTGCAGAATTAA 324552 >seq43 Length=496757 Score = 95.1 bits (104), Expect = 2e-14 Identities = 122/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 201570 ATACCAGAAATTGGAGATAAATTTTGTTCTGGA-ATGGCCCAAAAAGGAACTTGTGGTAT 201628 |||||| ||||||| || ||||||||| | || |||| ||||||| ||||| || || Sbjct 488038 ATACCATAAATTGGTGACAAATTTTGTAGTAGACATGGAT-AAAAAGGTACTTGCGGAAT 487980 Query 201629 GATTTATGCACAAGAAGATATGCCGTTTACACAATCGGGTATGACCCCGGATATTATAAT 201688 || ||| | |||| ||| | || ||||| | | || || | || || | | ||| Sbjct 487979 GACCTATCGATAAGAGGATTTACCATTTACTTTAACAGGAATATCTCCTGACTTAACAAT 487920 Query 201689 CAATCCAAATTGTATACCATCAAGAATGACCATAAATCAAATAATT 201734 ||||||| ||||||| |||||||||||||| || | |||| ||| Sbjct 487919 CAATCCACATTGTATTCCATCAAGAATGACTATTGGTAAAATTATT 487874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655275552287000