Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq37 102 8e-17 seq21 100 3e-16 seq56 95.1 1e-14 seq25 91.5 1e-13 seq143 89.7 5e-13 >seq37 Length=526299 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| || | ||||||||| || | || |||||||||| ||||| || || Sbjct 191458 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 191399 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| | ||| || || ||| | || || | || | ||| || || Sbjct 191398 AGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 191339 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| ||| |||| | ||| | | || | ||||||| ||||| || Sbjct 191338 ATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAAC 191280 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | ||||| || || ||||||||||| ||||||||||| Sbjct 191279 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 191232 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| || | ||||||||| || | || |||||||||| ||||| || || Sbjct 195151 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 195092 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| | ||| || || ||| | || || | || | ||| || || Sbjct 195091 AGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 195032 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| ||| |||| | ||| | | || | ||||||| ||||| || Sbjct 195031 ATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAAC 194973 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | ||||| || || ||||||||||| ||||||||||| Sbjct 194972 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 194925 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| || | ||||||||| || | || |||||||||| ||||| || || Sbjct 197467 CCACCTCTCAATCTCAAAACTAAGTGGAGGGTTGATTCTTTTTAAATGTTATAGTCTGAA 197408 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| | ||| || || ||| | || || | || | ||| || || Sbjct 197407 AGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 197348 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| ||| |||| | ||| | | || | ||||||| ||||| || Sbjct 197347 ATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAAC 197289 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | ||||| || || ||||||||||| ||||||||||| Sbjct 197288 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 197241 >seq21 Length=592296 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| ||| | |||||||||||| | || |||||||||| || |||||||| Sbjct 450419 CCACCTCTTAATCTCAAAACTAAATGTAAGGTTGATTCTTTTTAAATATTGTAATCTGAA 450360 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| |||||||| || ||| | |||| | || | ||| || || Sbjct 450359 AGAGTTCTTCCATCTTCTAGTTGTTTTCCTGCAAAAATCAATCTTTATTAATCAGGTGGG 450300 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| || || ||| | || | |||| | | || | ||||||| || ||||| Sbjct 450299 ATTCCTTCCTTATC-TTAAATCTTAGCTTTAACAGCGTCAATGGTGTCTGATGGCTCTAC 450241 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| ||| | ||||| || |||| ||||| || || |||| |||| Sbjct 450240 ATCAAGAGTGATGGTCTTTCCCGTCAGGGTTTTAACAAAAATTTACATA 450192 >seq56 Length=425007 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| || | ||||||||| || | || |||||||||| ||||| || || Sbjct 127586 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 127645 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| | || || || ||| | || || | || | ||| || || Sbjct 127646 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 127705 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| ||| |||| | ||| | | || | ||||||| ||||| || Sbjct 127706 ATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAAC 127764 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| ||| | ||||| || || ||||||||||| ||||||| |||| Sbjct 127765 ATCAAGAGTAATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACATA 127813 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| |||| || | ||| ||||| || | || |||||||||| ||||| || || Sbjct 117015 GCCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGA 116956 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||| || ||||| | || || || ||| | || || | || | ||| || || Sbjct 116955 AAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGG 116896 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCTGTGGGTTCTA 137362 || ||||| ||||| ||| |||| | ||| | | || | ||||||| ||||| | Sbjct 116895 GATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAA 116837 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 | |||| ||| | ||||| || || ||||||||||| ||||||| |||| Sbjct 116836 CATCAAGAGTAATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACATA 116787 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| |||| || | ||| ||||| || | || |||||||||| ||||| || || Sbjct 131140 GCCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGA 131081 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||| || ||||| | || || || ||| | || || | || | ||| || || Sbjct 131080 AAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGG 131021 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCTGTGGGTTCTA 137362 || ||||| ||||| ||| |||| | ||| | | || | ||||||| ||||| | Sbjct 131020 GATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAA 130962 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 | |||| ||| | ||||| || || ||||||||||| ||||||| |||| Sbjct 130961 CATCAAGAGTAATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACATA 130912 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| || | ||||||||| || | || |||||||||| ||||| || || Sbjct 54808 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 54867 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| | || || || ||| | || || | || | ||| || || Sbjct 54868 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 54927 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| ||| |||| | ||| | | || | ||||| | ||||| || Sbjct 54928 ATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCAATTGTGTCAGATGGTTCAAC 54986 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | ||||| || || ||||||||||| ||||||| ||| Sbjct 54987 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 55034 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| || | ||||||||| || | || |||||||||| ||||| || || Sbjct 55840 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 55781 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| | || || || ||| | || || | || | ||| || || Sbjct 55780 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 55721 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| ||| |||| | ||| | | || | ||||| | ||||| || Sbjct 55720 ATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCAATTGTGTCAGATGGTTCAAC 55662 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | ||||| || || ||||||||||| ||||||| ||| Sbjct 55661 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 55614 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| || | ||||||||| |||| || ||||||||||| ||||| || || Sbjct 240313 CCACCTCTCAATCTCAAAACTAAGTGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGAA 240254 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| | || || || ||| | || || | || | ||| || || Sbjct 240253 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 240194 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| || || ||| |||| | ||| | | || | ||||||| ||||| || Sbjct 240193 ATTCCTTCCTTATC-TTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAAC 240135 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||||| || || | |||||| ||||| |||| ||| Sbjct 240134 ATCGAGAGTGATTGTCTTTCCTGTGAGTGTTTTAACGAAAATTTACAT 240087 >seq25 Length=585425 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| | | |||||||||||| | || |||||||||| ||||| ||||| Sbjct 450120 CCTCCTCTAAGTCTCAAAACTAAATGGAGAGTTGATTCTTTTTAGATGTTATAATCTGAA 450061 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| | ||| || |||||| | || | | || | ||| ||||| Sbjct 450060 AGTGTTCTTCCATCTTCCAATTGCTTTCCAGCAAAAATTAATCTTTATTAATCAGGAGGG 450001 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| ||| | |||| ||| | | || | ||||| | || || || Sbjct 450000 ATTCCTTCCTTGTC-TTAAATCTTTGCCTTAACAGCATCGATGGTGTCAGATGGCTCAAC 449942 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| ||| | |||||||| || | ||||| || || |||| |||| Sbjct 449941 ATCAAGAGTGATGGTCTTGCCTGTGAGGGTTTTAACAAAAATTTACATA 449893 >seq143 Length=219650 Score = 89.7 bits (98), Expect = 5e-13 Identities = 163/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| || | ||||||||||||| || ||||| |||| || || || || Sbjct 171910 CCTCCTCTCAACCTTAAAACTAAATGAAGGGTTGATTCCTTTTAGATATTATAGTCTGAA 171851 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| | || ||| || ||| | || || | || || ||| || ||| Sbjct 171850 AGAGTTCTTCCATCTTCTAATTATTTCCCTGCAAAAATAAGCCTTTACTAATCAGGTGGT 171791 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||||||||| ||| |||| | ||| | | || | ||||||| || || || Sbjct 171790 ATTCCTTCTTTGTC-TTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGCTCGAC 171732 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATG 137419 |||| || | || || || || || || || || || ||||||||| |||||| Sbjct 171731 ATCAAGTGTGATTGTTTTTCCAGTTAAGGTCTTGACAAAAATTTGCATAACTTATG 171676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488540684007600