Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq37 98.7 7e-16 seq56 89.7 3e-13 seq21 86.0 4e-12 seq143 84.2 1e-11 >seq37 Length=526299 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||||||| | || || || || ||||| ||||||| ||||| || || || Sbjct 191458 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 191399 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | | || || ||||| ||||| |||||||| | | | | ||| | || Sbjct 191398 AGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 191339 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| |||||| | || ||| ||| | ||||| || ||| || Sbjct 191338 ATTCCTTCCTTGTCTTAAATTTT-AGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAAC 191280 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || ||||| ||||||||||| || ||||| Sbjct 191279 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 191232 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||||||| | || || || || ||||| ||||||| ||||| || || || Sbjct 195151 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 195092 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | | || || ||||| ||||| |||||||| | | | | ||| | || Sbjct 195091 AGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 195032 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| |||||| | || ||| ||| | ||||| || ||| || Sbjct 195031 ATTCCTTCCTTGTCTTAAATTTT-AGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAAC 194973 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || ||||| ||||||||||| || ||||| Sbjct 194972 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 194925 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||||||| | || || || || || || ||||||| ||||| || || || Sbjct 197467 CCACCTCTCAATCTCAAAACTAAGTGGAGGGTTGATTCTTTTTAAATGTTATAGTCTGAA 197408 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | | || || ||||| ||||| |||||||| | | | | ||| | || Sbjct 197407 AGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 197348 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| |||||| | || ||| ||| | ||||| || ||| || Sbjct 197347 ATTCCTTCCTTGTCTTAAATTTT-AGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAAC 197289 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || ||||| ||||||||||| || ||||| Sbjct 197288 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 197241 >seq56 Length=425007 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||||||| | || || || || ||||| ||||||| ||||| || || || Sbjct 54808 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 54867 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | | || || |||| ||||| |||||||| | | | | ||| | || Sbjct 54868 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 54927 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| |||||| | || ||| ||| | ||||| || ||| || Sbjct 54928 ATTCCTTCCTTGTCTTAAATTTT-AGCTTTGACAGCGTCAATTGTGTCAGATGGTTCAAC 54986 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 |||| ||||| || || || ||||| ||||||||||| || | ||| || Sbjct 54987 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACATTGT 55037 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||||||| | || || || || ||||| ||||||| ||||| || || || Sbjct 55840 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 55781 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | | || || |||| ||||| |||||||| | | | | ||| | || Sbjct 55780 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 55721 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| |||||| | || ||| ||| | ||||| || ||| || Sbjct 55720 ATTCCTTCCTTGTCTTAAATTTT-AGCTTTGACAGCGTCAATTGTGTCAGATGGTTCAAC 55662 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 |||| ||||| || || || ||||| ||||||||||| || | ||| || Sbjct 55661 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACATTGT 55611 Score = 89.7 bits (98), Expect = 3e-13 Identities = 166/240 (69%), Gaps = 3/240 (1%) Strand=Plus/Minus Query 33513 AAAATCGTCA-CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGT 33571 |||||| | | ||||||||||| | || || || || ||||| ||||||| |||| Sbjct 117025 AAAATCATTAGCCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTAAATGT 116966 Query 33572 TGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCT 33631 | || || || ||||| | | | || || |||| ||||| |||||||| | | | | Sbjct 116965 TATAGTCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATT 116906 Query 33632 GATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCG 33690 ||| | || | ||||| ||||| |||||| | || ||| ||| | ||||| Sbjct 116905 AATCAGGTGGGATTCCTTCCTTGTCTTAAATTTT-AGCTTTGACAGCGTCAATTGTGTCT 116847 Query 33691 CTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || ||| || |||| || || || || || ||||| ||||||||||| || | |||| Sbjct 116846 GATGGTTCAACATCAAGAGTAATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACATA 116787 Score = 89.7 bits (98), Expect = 3e-13 Identities = 166/240 (69%), Gaps = 3/240 (1%) Strand=Plus/Minus Query 33513 AAAATCGTCA-CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGT 33571 |||||| | | ||||||||||| | || || || || ||||| ||||||| |||| Sbjct 131150 AAAATCATTAGCCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTAAATGT 131091 Query 33572 TGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCT 33631 | || || || ||||| | | | || || |||| ||||| |||||||| | | | | Sbjct 131090 TATAGTCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATT 131031 Query 33632 GATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCG 33690 ||| | || | ||||| ||||| |||||| | || ||| ||| | ||||| Sbjct 131030 AATCAGGTGGGATTCCTTCCTTGTCTTAAATTTT-AGCTTTGACAGCGTCAATTGTGTCT 130972 Query 33691 CTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || ||| || |||| || || || || || ||||| ||||||||||| || | |||| Sbjct 130971 GATGGTTCAACATCAAGAGTAATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACATA 130912 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||||||| | || || || || ||||| ||||||| ||||| || || || Sbjct 127586 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 127645 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | | || || |||| ||||| |||||||| | | | | ||| | || Sbjct 127646 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 127705 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| |||||| | || ||| ||| | ||||| || ||| || Sbjct 127706 ATTCCTTCCTTGTCTTAAATTTT-AGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAAC 127764 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| || || || || || ||||| ||||||||||| || | |||| Sbjct 127765 ATCAAGAGTAATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACATA 127813 >seq21 Length=592296 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||||||||| || | || || ||||||| || ||||||| || |||||||| | Sbjct 450421 CACCACCTCTTAATCTCAAAACTAAATGTAAGGTTGATTCTTTTTAAATATTGTAATCTG 450362 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || || | | | || || | ||||||||| ||||||||||| | | | ||| | | Sbjct 450361 AAAGAGTTCTTCCATCTTCTAGTTGTTTTCCTGCAAAAATCAATCTTTATTAATCAGGTG 450302 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| || || ||| || | || |||| ||| | |||||| || || Sbjct 450301 GGATTCCTTCCTTATCTTAAATCTT-AGCTTTAACAGCGTCAATGGTGTCTGATGGCTCT 450243 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || |||| ||||| || || || || | ||||| ||||| || | |||| Sbjct 450242 ACATCAAGAGTGATGGTCTTTCCCGTCAGGGTTTTAACAAAAATTTACATA 450192 >seq143 Length=219650 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||||||| | ||| || ||||| || || || |||| || || || || || Sbjct 171911 ACCTCCTCTCAACCTTAAAACTAAATGAAGGGTTGATTCCTTTTAGATATTATAGTCTGA 171852 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | | || || |||| ||| || |||||||| | | | || ||| | || Sbjct 171851 AAGAGTTCTTCCATCTTCTAATTATTTCCCTGCAAAAATAAGCCTTTACTAATCAGGTGG 171792 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| |||||| | || ||| ||| | ||||| || || | Sbjct 171791 TATTCCTTCTTTGTCTTAAATTTT-AGCTTTGACAGCGTCAATTGTGTCTGATGGCTCGA 171733 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| ||||| || ||||| || || ||||| || |||||| Sbjct 171732 CATCAAGTGTGATTGTTTTTCCAGTTAAGGTCTTGACAAAAATTTGCATA 171683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328701824698560