Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq75 242 3e-59 seq80 215 4e-51 seq59 154 1e-32 >seq75 Length=370783 Score = 242 bits (268), Expect = 3e-59 Identities = 556/823 (68%), Gaps = 18/823 (2%) Strand=Plus/Minus Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 ||| | || | |||||||| |||||| | || | || || ||||| || || || | Sbjct 196926 TAACAGCAGATGAAAAACACTTTATAAAGTATGTGCTTGCTTTCTTTGCAGCAAGTGATG 196867 Query 43878 GGATAGTCAATGAAAATTTGG-TTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCA 43936 | || || ||||||||||||| ||| | | || | ||||||||| | ||||||||| Sbjct 196866 GCATTGTGAATGAAAATTTGGCTTAATAATTCTGTACT-GAAGTTCAAGTTCCAGAAGCA 196808 Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 ||||||||||||| ||| |||| || || ||||||||||| || |||| ||| ||| Sbjct 196807 AGATGTTTTTATGGATTTTAAATAGCAATGGAAAATATTCACTCAGAAACTTACTCACTT 196748 Query 43997 CTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAA 44056 | || ||||| || || | |||| | || || || | || |||| || || Sbjct 196747 TTAATTGATACTTATATTACTGATGAAAATGAAAAAAATTACCTTCTTCATGCTATTGAT 196688 Query 44057 ACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGAT 44116 | || |||| || || | |||||| ||||| | ||||||||||| | |||||| Sbjct 196687 AATGTGCCTGTTATATAAAAGAAAGCAATGTGGGCTATGAAATGGATAAACTAAAATGAC 196628 Query 44117 TCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCG 44176 || |||| ||| || | | || ||||| | || ||||| ||||||||||| || || Sbjct 196627 TCATTTGCTGAAAGATTAATTGCTTTTGCTGCAGTTGAAGGTATTTTCTTTTCTGGTTCA 196568 Query 44177 TTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAAT 44236 ||| || ||||| ||| |||| || || |||||||| || | || ||||||||| Sbjct 196567 TTTTGTGCAATATTCTGGATAAAAAAGAGATCATTGATGCCAGGACTAACATTTTCAAAT 196508 Query 44237 GAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG-CTT-GTTACTTGGAT 44294 || ||||| | |||||||| | ||| ||||||||||| ||| |||| | Sbjct 196507 GAATTAATTTCAAGAGATGAAGGTCTTCATACTGATTTTGCTTGTCTTCTTTAC--AAAC 196450 Query 44295 ATCTAGGAGACGATAAGCCTTCATGTAA--GAC-AATTACAGATATTGTTGTAGAGGCAG 44351 | ||| | |||| || | |||| || |||| || ||| | | |||| Sbjct 196449 ACTTAGTA---AATAA--ATTGA-GTAATCAACGAATTCATGAAATTATATCATCCGCAG 196396 Query 44352 TAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATG 44411 | | || ||| |||||||||| | ||| ||||| || | ||||| ||||||||| Sbjct 196395 TTGAAATTGAAAAAGAATTTATAAGCGAAGCTTTACCAGTCGAATTAATTGGAATGAATT 196336 Query 44412 AACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTT 44471 ||| ||||| |||||||||||| |||||||| | || | || | | | ||| Sbjct 196335 CTAATTTAATGAAATAATATATTGAATTTGTTGCAGATAGACTAATATTTGCATTAGGTG 196276 Query 44472 GCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAG 44531 |||| || | | | | || || ||||| | ||||| | || || ||| ||| Sbjct 196275 CACCTAAAATATACAATTCAAAGAATCCTTTTGAATGGATGGATATGATATCATTGTAAG 196216 Query 44532 GCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGA-TA 44590 | ||||| || || || |||| | | || ||||| || | | || || |||| || Sbjct 196215 GTAAAACTAATTTCTTCGAAAGAAGAGTAGGAGATTACTAAAAAGCTGGAGTAATGAGTA 196156 Query 44591 ACAAGT--GACAATAAATTTACTACGGATGAAGATTTCTAATT 44631 | || | || || |||||||| ||||| ||||| | ||| Sbjct 196155 AAAAATAAGATAAAGTATTTACTATGGATGCTGATTTTTGATT 196113 >seq80 Length=351589 Score = 215 bits (238), Expect = 4e-51 Identities = 549/816 (67%), Gaps = 26/816 (3%) Strand=Plus/Plus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 ||||||||||||||| | || | || || ||||| || || || || || || ||| Sbjct 174567 GAAAAACATTTTATAAAGTATGTCCTTGCTTTCTTTGCAGCAAGTGATGGTATTGTAAAT 174626 Query 43889 GAAAATTTGG-TTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTA 43947 ||||| | | ||||| |||| | ||||||||| | |||||||| |||||||||| Sbjct 174627 GAAAACCTAGCTTAGTAATTTTGTACT-GAAGTTCAAATTCCAGAAGCCAGATGTTTTTA 174685 Query 43948 TGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATAC 44007 ||| || |||| || || || ||||| ||||| |||| || |||| |||| || || Sbjct 174686 TGGATTCTAAATAGCTATGGAGAATATACATTCAGAAACTTATTCTCTTTTGATTGACAC 174745 Query 44008 GTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTA-ATGCGATAGAAACAGTACCTG 44066 ||||| | |||| | || || || || | || |||| || || | || |||| Sbjct 174746 TTACATAACTGATGAAAATGAAAAAAATT-ATCTTCTACATGCTATTGACAATGTTCCTG 174804 Query 44067 CGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAG 44126 || || | |||||| ||||| | || ||||| |||| |||||||| |||| | Sbjct 174805 TTATACAAAAAAAAGCAATGTGGGCAATGAAGTGGATTAATTAGAATGATTCATTTGCTG 174864 Query 44127 AACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCA 44186 || || | |||| ||||| | ||| |||||||| |||||||| || || ||| |||| Sbjct 174865 AAAGATTAATCGCTTTTGCTGCTGTTGAAGGCATCTTCTTTTCTGGTTCATTTTGTGCCA 174924 Query 44187 TATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAA 44246 | |||||| | || ||| || || |||||||| | || ||||||||||| | ||| Sbjct 174925 TTTTTTGGATCAAAAAAAGATCATTAATGCCTGGACTTACCTTTTCAAATGAACTTATAT 174984 Query 44247 GTCGTGATGAAGG-CTT-ACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGA 44304 | |||||||| ||| ||| | ||||||||||| | || | | | || || Sbjct 174985 CAAGAGATGAAGGACTTCACACT--GATTTTGCTTGTCTCCTA--TATAAACATATGA-T 175039 Query 44305 CGATAAGCCTTCATGTAA--GAC-AATTACAGATATTGTTGTAGAGGCAGTAAAGATAGA 44361 |||| || | |||| || |||| | ||| || | || || | || || Sbjct 175040 TAATAA--ATTGA-GTAATCAACGAATTCATTAAATTATTTCATCAGCTGTTGAAATTGA 175096 Query 44362 ACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGAT 44421 | |||||||||| | ||| ||||| || | ||||| ||||||||| ||| || Sbjct 175097 AAAAGAATTTATTAGTGAAGCTTTACCAGTTGAATTAATCGGAATGAATTCTAATTTAAT 175156 Query 44422 GAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACA 44481 ||| ||||||| |||| |||||||| | ||| | || | || |||| Sbjct 175157 GAAATAATATATAGAATTTGTTGCAGATAGATTAATATTTTCTTTAGGAGCACCTAAAAT 175216 Query 44482 CTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAA 44541 || | | | | || || ||||| | ||||| | || || || |||| |||||||| Sbjct 175217 ATACAATTCAAAGAATCCTTTTGAATGGATGGATATGATATCCTTATAAGGTAAAACAAA 175276 Query 44542 CTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGA-TAACAAGTGACA 44600 || || |||| | | || ||||| ||| | | || || |||| ||| || ||| Sbjct 175277 TTTCTTCGAAAGAAGAGTCGGAGACTATTAAAAAGCTGGAGTTATGAGTAAAAA---ACA 175333 Query 44601 --ATAA---ATTTACTACGGATGAAGATTTCTAATT 44631 |||| |||||||| ||||| ||||| | ||| Sbjct 175334 AGATAAAGTATTTACTATGGATGCTGATTTTTGATT 175369 >seq59 Length=418960 Score = 154 bits (170), Expect = 1e-32 Identities = 423/638 (66%), Gaps = 14/638 (2%) Strand=Plus/Plus Query 40650 TCAATATTTGGATGTCAAA--AT-AGATACAATTTGAGA-AATCAGTTTCCGTTGCTAAC 40705 ||||||||||||| ||| || |||| |||||| | |||| ||||| || |||| Sbjct 374274 TCAATATTTGGAT---AAACCATGAGATTTAATTTGGCAGAATCT-TTTCCTTTATTAAC 374329 Query 40706 TACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGGTTTATCAAAGGTTG 40765 ||||||||| | || | || ||| ||| || | || |||||| | ||||| Sbjct 374330 AACAAAAAAAGTATTCTTTCGTGGAGTTGTAGAGGAGTTATTGTGGTTTTTAAAAGGCAA 374389 Query 40766 TACTAATGCTAAGAAATTATCAGA-AAGAGGAGTGCACATTTGGAATGCGCACAGTTCTA 40824 ||| | | || |||||| || |||| || | | || ||| | | | | | | Sbjct 374390 TACAGACGGAAAATAATTATTGGATAAGAAGATTA-AGATATGGGAAGGAAATGGAACAA 374448 Query 40825 AAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTT 40884 | |||||| ||| || |||||| |||| || | || |||| | || || || | Sbjct 374449 GAGACTATTTGAATAGTATTGGATTAAAAGAGAGATAGGAGCATGATTTGGGACCAGTAT 374508 Query 40885 ATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTACTCTGATTATACCA 40944 |||||||| | | | |||||||||| || |||||| | | || |||||||| | Sbjct 374509 ATGGATTTTAATGGAGACATTTTGGTGCCAAATATAAGGATTGTTAAAGTGATTATAATA 374568 Query 40945 ATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAATCCGATCCCGATAGCC 41004 || ||||| ||||| || || | ||||| | ||||| |||| |||| Sbjct 374569 ATTAAGGAGTGGATTAAGTAAAAGATGTTATTTAATAACTTAAAAATAATCCAAATAGTA 374628 Query 41005 GACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTT 41064 || | || ||||||| || ||||| || | || || | | ||||||||||||||||| Sbjct 374629 GAAGAATTATATTGTCGGCTTGGAATCCTAGCGATTTAAAATAGATGGCATTGCCACCTT 374688 Query 41065 GTCATTTGTTATGTC--AGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCA 41122 |||| ||| ||||| | |||| || |||||| || || || ||||| | Sbjct 374689 GTCA--TGTAATGTCGTAATTTTTTGTAGCAAATGGTAAATTGAGTTGCATGATGTATTA 374746 Query 41123 AAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCAC 41182 |||||| |||| | || |||| | || || || || || |||||||| | | || Sbjct 374747 GAGATCATGTGATTTTGGTTTAGGAATACCATTCAATATTGCTAGTTATGCCTTATTAAC 374806 Query 41183 GTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGA 41242 |||||| ||||| | | |||||| || || |||||| |||| ||||| || Sbjct 374807 ATATATGCTTGCAAAGGAATGCAATTTGAATTTAGGAGAATTTATTCATGTTTTAGGTGA 374866 Query 41243 TGGACATATTTACATTAATCACATAGAGCCGTTAACAG 41280 | ||||||||| | |||||| |||| | |||| || Sbjct 374867 TACACATATTTATAGTAATCATGTAGATGCTTTAAAAG 374904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397453369710715