Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq111 235 3e-57 seq21 181 5e-41 >seq111 Length=285051 Score = 235 bits (260), Expect = 3e-57 Identities = 419/602 (70%), Gaps = 16/602 (3%) Strand=Plus/Minus Query 64892 CCTGTGCCAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGGTGCATAAAAG 64951 || || |||||||| | | ||||||| |||| |||| || ||||| || ||||| | Sbjct 62115 CCAGTACCAATACCTTCAGCTCCATTTACTAAACTCATTGGTATAATAGGAACATAATAA 62056 Query 64952 ATAGGCTCAACAATGAGACCATCATCATCCAAATACTTCAA--AATGGCATCATCCTCTT 65009 || ||||| || ||||| || |||||||||||||| |||| |||||| | || Sbjct 62055 TCTGGTTCAACCATCTATCCATCGTCTTCCAAATACTTCAATAAATG--ATCATCTTATT 61998 Query 65010 TTGGAAATATAGAACGAGTTATTTTATTCAATTGAGTATAAATATATCTTTCGGATGCGT 65069 |||||||||| | ||| |||||||| | ||| ||||||||||| | ||||| | Sbjct 61997 CTGGAAATATATGTCTAGTAATTTTATTTAGAGCTGTAGAAATATATCTTGCAGATGCAT 61938 Query 65070 GGTCTTGTCCA---GTTCGTCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATAT 65126 | |||| ||| | || | ||||||| ||| ||||| | | ||||||||||| Sbjct 61937 GATCTTTACCACCCATAGCTCTACTACCAAACTAACCTTTTGGTAAAAGTAAATTAATAT 61878 Query 65127 TGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAAACTCGCTTCAC 65186 | || ||||||| ||| || | |||||||| || |||| || | || || | Sbjct 61877 TATTGGAACCAACAAAGTTTTATGCCATTCCTATGATTGTTGAAACTAGTGATAAATCTC 61818 Query 65187 CGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCG 65246 | |||||||| |||||||||||| | ||| |||| | || | ||||| ||||| Sbjct 61817 CATGATGATAAGCTGAATGTTCAGCTATATAACCACCTAGTTATACTACTTTGATTTCTT 61758 Query 65247 TTGTTAAATTCTTTTTAA---ATGCAGAATACAATATTTTCCGTAAACTAATTTTCAATC 65303 | ||| ||| | |||| ||||| ||| || | ||||| | | | | |||||||| Sbjct 61757 ATTTTAGATTTCTCTTAAAACATGCA-AAT--AAAACTTTCCTTTATCCAGGTTTCAATC 61701 Query 65304 CATCCATTAAATTAGGAATGCTTCTGTCACAATCATATTTTGAGAAATGTATGAATTCTT 65363 ||||||||||| |||||| ||| | |||| | || ||||| || ||||||| Sbjct 61700 CATCCATTAAAGAAGGAATAGATCTAATATTATCAGCCATCGAAAAATGAATTAATTCTT 61641 Query 65364 TGTTAATAAATTCTTCATATGAAACACTCGTATTATCTGTATTCAA-ATAACTATCGCGA 65422 ||| ||||||||| ||| | |||| | || | | |||| ||| ||| || Sbjct 61640 TGTGTATAAATTCTGAATAACCTA-ACTCTTTTTTGGTATGATCAACATATAAATCATGA 61582 Query 65423 TTATATTTTTCTAACCATTCTTTTCTATCACTTGAGCGTTT-TTATTAAATATTAAATCA 65481 ||||||| | ||||||||| |||||||||| ||| ||| || ||||| |||||| Sbjct 61581 TTATATTGTGCTAACCATTATTTTCTATCATTTGCTTTTTTCTTGTTAAAACACAAATCA 61522 Query 65482 AT 65483 || Sbjct 61521 AT 61520 >seq21 Length=592296 Score = 181 bits (200), Expect = 5e-41 Identities = 407/602 (68%), Gaps = 16/602 (3%) Strand=Plus/Plus Query 64892 CCTGTGCCAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGGTGCATAAAAG 64951 ||||| || || || | | ||||| | || |||| ||||| |||||| ||||| | Sbjct 12840 CCTGTACCGATTCCTTCAGCTCCATTAACCAAGCTCATAGGAATGATTGGTACATAATAT 12899 Query 64952 ATAGGCTCAACAATGAGACCATCATCATCCAAATACTTCAAAATGGCATCATCCTCTTTT 65011 ||| ||||| || |||||||| || | ||| || || || |||||| | | | Sbjct 12900 TCAGGTTCAACCATTTCTCCATCATCTTCAATATATTTTAAGATATGATCATCTTACTCT 12959 Query 65012 GGAAATATAGAACGAGTTATTTTATTCAATTGAGTATAAATATATCTTTCGGATGCGTGG 65071 ||| | ||| | | ||| |||||||| || || |||||||||| | || || || Sbjct 12960 GGATAGATATATCTAGTAATTTTATTTAAAGCTGTTGAAATATATCTGGCAGAAGCATGA 13019 Query 65072 TCTTGTCCAGT--TCGTCGTGTT-CCAAACTGACCATTTGGCATTAATAAATTAATATTG 65128 || | || | | | | | ||||| | ||| | || | |||||| ||||| || Sbjct 13020 TCCTTACCTCCCATAGCCCTACTACCAAATTAACCTCTAGGTAATAATAAGTTAATGTTA 13079 Query 65129 TTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAAACTCGCTTCACCG 65188 ||||| |||| ||| || | |||||| || || || | || |||| ||||| Sbjct 13080 TTTGATCCAACAAAGTTTTAAGCCATACCAATTATAGTTGATACTAAAGATATATCACCA 13139 Query 65189 TGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTT 65248 ||||||||| |||||||||| | | |||||| | |||| | |||||||||||||| | Sbjct 13140 TGATGATATGCTGAATGTTCTGCTATATATCCTCCTAATTAAACAACTTTTATTTCCTGT 13199 Query 65249 GTTAAATTCTTTTT---AAATGCAGAATACAATATTTTCCGTAAACTAATTTTCAATCCA 65305 |||||||| | || | ||||| |||| || ||| | | ||| ||| || ||| Sbjct 13200 TTTAAATTCCTCTTGAAACATGCA-AATAAAACCTTT--CTTTAACCGGGTTTTAAACCA 13256 Query 65306 TCCATTAAATTAGGAATGCTTCTGTCACAATCATATTTTGAGAAATGTATGAATTCTTTG 65365 ||||| | |||||| ||| | |||| | || ||||| || | |||||| Sbjct 13257 TCCATCATTGAAGGAATTGATCTAATATTATCAGCCATAGAAAAATGAATAAGTTCTTTA 13316 Query 65366 TTAATAAATTCTTCATATGAAACACTCGTATTATCTGTATTCAA-ATAACTATCGCGATT 65424 | |||||| |||| |||| | | || | ||| | | |||| ||| ||| |||| Sbjct 13317 TGAATAAAGTCTTAATATCCTA-ATTCCTTCTATGTATGATCAACATATAAATCATGATT 13375 Query 65425 ATATTTTTCTAACCATTCTTTTCTATCACTTGAGCGTTT---TTATTAAATATTAAATCA 65481 ||||| | | ||||||| |||||||||| | ||| ||| |||||||| |||||| Sbjct 13376 ATATTATGCCAACCATTATTTTCTATCA--TTAGCTTTTTTCTTATTAAAACATAAATCG 13433 Query 65482 AT 65483 || Sbjct 13434 AT 13435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235678440313950