Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq25 131 2e-25 seq23 116 4e-21 seq56 114 1e-20 seq28 114 1e-20 seq143 113 5e-20 >seq25 Length=585425 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||| |||| ||||| || || || || |||||||| || |||||||| |||||| || | Sbjct 449894 ATGTAAATTTTTGTTAAAACCCTCACAGGCAAGACCATCACTCTTGATGTTGAGCCATCT 449953 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | | | ||||| || ||| | |||||||| ||||| ||||| || | Sbjct 449954 GACACCATCGATGCTGTTAAGGCAAAGATTTAAGACAAGGAAGGAATCCCTCCTGATTAA 450013 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 | | ||||||||||||| |||||| | || |||| | || || |||| ||||| Sbjct 450014 TAAAGATTAATTTTTGCTGGAAAGCAATTGGAAGATGGAAGAACACTTTCAGATTATAAC 450073 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| ||||| ||| |||| ||| | ||| | || || Sbjct 450074 ATCTAAAAAGAATCAACTCTCCATTTAGTTTTGAGACTTAGAGGAGG 450120 >seq23 Length=588601 Score = 116 bits (128), Expect = 4e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||| |||| || |||||||| || || || ||||| || |||||||| ||||| || Sbjct 76904 AATGTAAATTTTCGTCAAGACACTCACAGGAAAGACAATCACTCTTGATGTTGAACCATC 76963 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| | | || |||||||| | |||||||| ||||| || || || | Sbjct 76964 TGATACTATTGATGCTGTTAAAGCTAAAATCTAAGACAAGGAAGGAATCCCACCCGATTA 77023 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 | | || || ||||| || || || | || || | | || || |||||||||| Sbjct 77024 ATAAAGACTTATCTTTGCAGGAAAATAATTAGAAGACGGAAGAACACTCTCAGACTATAA 77083 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | || |||||||||| || ||||| |||||||| Sbjct 77084 TATCTAAAAGGAATCAACACTTCACTTAGTCTTG 77117 Score = 105 bits (116), Expect = 8e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||| |||||||||| || || || || || ||||| ||||||||||| ||||| || | Sbjct 76677 ATGTAAATCTTTGTTAAAACACTCACAGGAAAGACAATTACTCTTGATGTTGAACCATCT 76736 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| | | || |||||||| | |||||||| ||||| || || || | Sbjct 76737 GATACTATTGATGCTGTTAAAGCTAAAATCTAAGACAAGGAAGGAATCCCACCCGATTAA 76796 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 | | || || ||||| || || || | || || | | || || |||||||||| Sbjct 76797 TAAAGACTTATCTTTGCAGGAAAATAATTAGAAGACGGAAGAACACTTTCAGACTATAAC 76856 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || |||||||||| || || || |||| ||| Sbjct 76857 ATCTAAAAGGAATCAACACTCCACTTAGTTTTG 76889 >seq56 Length=425007 Score = 114 bits (126), Expect = 1e-20 Identities = 162/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 27394 AATATTACTATA--ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTG 27451 ||||||| || | ||| |||| ||||| || || | || || |||||||||||||||| Sbjct 116774 AATATTAATAGATTATGTAAATATTTGTAAAAACATTAACTGGAAAGACTATTACTCTTG 116833 Query 27452 AGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAA 27511 | ||||| || || | |||| | | || ||||||||| | |||||||| |||| Sbjct 116834 ATGTTGAACCATCAGACACAATTGACGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAA 116893 Query 27512 TTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCC 27571 | || || || | | | || |||||||| || ||| || | || |||| | || | Sbjct 116894 TCCCACCTGATTAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACAC 116953 Query 27572 TAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | |||||||||| | |||| ||||| ||||| || |||||||| Sbjct 116954 TTTCAGACTATAACATTTAAAAAGAATCAACTCTCCACTTAGTCTTG 117000 Score = 114 bits (126), Expect = 1e-20 Identities = 162/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 27394 AATATTACTATA--ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTG 27451 ||||||| || | ||| |||| ||||| || || | || || |||||||||||||||| Sbjct 130899 AATATTAATAGATTATGTAAATATTTGTAAAAACATTAACTGGAAAGACTATTACTCTTG 130958 Query 27452 AGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAA 27511 | ||||| || || | |||| | | || ||||||||| | |||||||| |||| Sbjct 130959 ATGTTGAACCATCAGACACAATTGACGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAA 131018 Query 27512 TTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCC 27571 | || || || | | | || |||||||| || ||| || | || |||| | || | Sbjct 131019 TCCCACCTGATTAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACAC 131078 Query 27572 TAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | |||||||||| | |||| ||||| ||||| || |||||||| Sbjct 131079 TTTCAGACTATAACATTTAAAAAGAATCAACTCTCCACTTAGTCTTG 131125 Score = 109 bits (120), Expect = 6e-19 Identities = 161/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 27394 AATATTACTATA--ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTG 27451 ||||||| || | ||| |||| ||||| || || | || || |||||||||||||||| Sbjct 127826 AATATTAATAGATTATGTAAATATTTGTAAAAACATTAACTGGAAAGACTATTACTCTTG 127767 Query 27452 AGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAA 27511 | ||||| || || | |||| | | || ||||||||| | |||||||| |||| Sbjct 127766 ATGTTGAACCATCAGACACAATTGACGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAA 127707 Query 27512 TTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCC 27571 | || || || | | | || |||||||| || ||| || | || |||| | || | Sbjct 127706 TCCCACCTGATTAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACAC 127647 Query 27572 TAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | |||||||||| | |||| ||||| ||||| || |||| ||| Sbjct 127646 TTTCAGACTATAACATTTAAAAAGAATCAACTCTCCACTTAGTTTTG 127600 >seq28 Length=561789 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||| |||| ||||| ||||| ||||| || ||||| || || ||||| |||||| || | Sbjct 90997 ATGTAAATTTTTGTTAAGACCCTTACAGGGAAGACCATCACACTTGATGTTGAGCCATCT 90938 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | | | ||||| || ||| | ||||| || ||||| || || || | Sbjct 90937 GATACTATCGATGCTGTTAAGGCAAAGATTTAAGACAAAGAAGGAATCCCACCTGATTAA 90878 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 | | | ||||||||||| |||||| | || |||| | || || |||| ||||| Sbjct 90877 TAAAGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGAAGAACTCTTTCAGATTATAAC 90818 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || |||| ||||| ||||| ||| |||| ||| Sbjct 90817 ATCTAAAAAGAATCAACTCTCCATTTAGTATTG 90785 >seq143 Length=219650 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||||||||| | || || || || || || ||||| || ||| || Sbjct 171684 ATGCAAATTTTTGTCAAGACCTTAACTGGAAAAACAATCACACTTGATGTCGAGCCATCA 171743 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| | | || ||||||||| | ||||| || ||||| || || || || Sbjct 171744 GACACAATTGACGCTGTCAAAGCTAAAATTTAAGACAAAGAAGGAATACCACCTGATTAG 171803 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 | | || |||||||| || || || | || |||| | || || ||||||||||| Sbjct 171804 TAAAGGCTTATTTTTGCAGGGAAATAATTAGAAGATGGAAGAACTCTTTCAGACTATAAT 171863 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 || |||||||||| || |||||| |||| || Sbjct 171864 ATCTAAAAGGAATCAACCCTTCATTTAGTTTT 171895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306529018160