Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq19 93.3 5e-14 >seq19 Length=614858 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 89181 ACATGGAAAGAATTATTCGATCCTGTCTTGCATATAGAACTTAGGAGGTGGGCTGATATA 89240 || |||||| || | ||||| || |||||||| ||| | || | ||||| ||| Sbjct 325007 ACTTGGAAATAAAGAAATGATCCAGTATTGCATATTGAATTAAGAAAATGGGCAGATTGT 325066 Query 89241 TTTATTATCGCGCCACTAACGGCTAATACTCTAGCGAAGATAGCTAATGGTATATGCGAC 89300 ||| | || || || || | |||||||| | || || || |||||||| |||| ||| Sbjct 325067 TTTTTAATTGCTCCTCTTTCAGCTAATACAATGGCAAAAATTACTAATGGTTTATGTGAC 325126 Query 89301 AACTTACTAACTTCTATAGTTAGGGCATGGGATATATCA-AAGCCCCTTATTTTTTGTCC 89359 || || |||| ||| | | | ||||||||| ||| | ||||| | ||||| || Sbjct 325127 AATTTGTTAACAAATATTGCTCGAGCATGGGAT-TATAATAAGCCTATGATTTTAGCACC 325185 Query 89360 TGCCATGAATACTCTAATGTGGGAACATCCTATTACTG 89397 |||||||||||| | |||| || |||| || |||| Sbjct 325186 TGCCATGAATACAATGATGTATGATAATCCAATAACTG 325223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603176705910320