Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq25 98.7 6e-16 seq37 86.0 4e-12 seq56 82.4 5e-11 >seq25 Length=585425 Score = 98.7 bits (108), Expect = 6e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | ||| || ||||||||||| || |||| ||||||||||||||| Sbjct 450120 CCTCCTCTAAGTCTCAAAACTAAATGGAGAGTTGATTCTTTTTAGATGTTATAATCTGAA 450061 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | ||||| | ||| || || ||||| ||||| | | || || || || Sbjct 450060 AGTGTTCTTCCATCTTCCAATTGCTTTCCAGCAAAAATTAATCTTTATTAATCAGGAGGG 450001 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| ||| |||| ||||| | || ||||| ||| || Sbjct 450000 ATTCCTTCCTTGTCTTAAATC-TTTGCCTTAACAGCATCGATGGTGTCAGATGGCTCAAC 449942 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || | || || || || || || | ||||| |||||||| | ||| || Sbjct 449941 ATCAAGAGTGATGGTCTTGCCTGTGAGGGTTTTAACAAAAATTTACATATT 449891 >seq37 Length=526299 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| || || |||||||| || |||| ||||||||| |||||| Sbjct 191458 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 191399 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | ||||| | ||| || || ||||| || | | | || || || || Sbjct 191398 AGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 191339 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| | | ||| | ||| || | ||||||||| || || Sbjct 191338 ATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAAC 191280 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || | || || || || || ||||| ||||| ||||| || ||||| || Sbjct 191279 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCATTTT 191229 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| || || |||||||| || |||| ||||||||| |||||| Sbjct 195151 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 195092 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | ||||| | ||| || || ||||| || | | | || || || || Sbjct 195091 AGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 195032 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| | | ||| | ||| || | ||||||||| || || Sbjct 195031 ATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAAC 194973 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || || || ||||| ||||| ||||| || ||||| Sbjct 194972 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 194925 >seq56 Length=425007 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| | | ||| || || |||||||| || |||| ||||||||| ||||| Sbjct 117015 GCCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGA 116956 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 |||||||| | ||||| | || || || ||||| || | | | || || || || Sbjct 116955 AAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGG 116896 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCA 34657 | ||| ||||||||| | | ||| | ||| || | |||||||||| || | Sbjct 116895 GATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAA 116837 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || || || || ||||| ||||| ||||| || | ||| Sbjct 116836 CATCAAGAGTAATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 116788 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| | | ||| || || |||||||| || |||| ||||||||| ||||| Sbjct 131140 GCCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGA 131081 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 |||||||| | ||||| | || || || ||||| || | | | || || || || Sbjct 131080 AAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGG 131021 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCA 34657 | ||| ||||||||| | | ||| | ||| || | |||||||||| || | Sbjct 131020 GATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAA 130962 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || || || || ||||| ||||| ||||| || | ||| Sbjct 130961 CATCAAGAGTAATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 130913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727517178519