Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq37 122 8e-23 seq56 118 9e-22 seq21 116 3e-21 seq23 105 6e-18 seq25 100 2e-16 seq143 93.3 4e-14 seq28 82.4 7e-11 >seq37 Length=526299 Score = 122 bits (134), Expect = 8e-23 Identities = 178/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 26966 TAAATTTTTTAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTAT 27025 || ||| || | |||| | | ||||| |||||||||||||| | || || ||| |||| Sbjct 194903 TATATTATTAATTTTAAAAGAAATGCAAATATTTGTAAAAACATTAACTGGAAAGACTAT 194962 Query 27026 TACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAA 27085 |||||||| || ||||| || ||| | || || |||||| |||||| ||||||| Sbjct 194963 CACTCTTGATGTTGAACCATCAGACACAATCGACGCTGTCAAAGCTAAAATTTAAGACAA 195022 Query 27086 AGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAG 27145 ||||| || ||||| ||| || | | | || | || || || ||||| ||||| | Sbjct 195023 GGAAGGAATCCCACCTGATTAATAAAGACTCATTTTTGCAGGAAAGCAATTAGAAGATGG 195082 Query 27146 TTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTT 27205 || |||| || || |||||| |||| || || || | || || |||||| | || Sbjct 195083 AAGAACACTTTCAGACTATAACATTTAAAAAGAATCAACTCTCCACTTAGTTTTGAGATT 195142 Query 27206 GCGGGGTGGCAT 27217 | | ||||| || Sbjct 195143 GAGAGGTGGAAT 195154 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||||||||| | || || ||| |||| |||||||| || ||||| || Sbjct 197241 ATGCAAATATTTGTAAAAACATTAACTGGAAAGACTATCACTCTTGATGTTGAACCATCA 197300 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || |||||| |||||| ||||||| ||||| || ||||| ||| || Sbjct 197301 GACACAATCGACGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 197360 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | || || || ||||| ||||| | || |||| || || ||| Sbjct 197361 TAAAGACTCATTTTTGCAGGAAAGCAATTAGAAGATGGAAGAACACTTTCAGACTATAAC 197420 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| |||| || || ||| | || || |||||| | ||| | ||||| || Sbjct 197421 ATTTAAAAAGAATCAACCCTCCACTTAGTTTTGAGATTGAGAGGTGGAAT 197470 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||||||||| | || || ||| |||| |||||||| || ||||| || Sbjct 191232 ATGCAAATATTTGTAAAAACATTAACTGGAAAGACTATCACTCTTGATGTTGAACCATCA 191291 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || |||||| |||||| ||||||| ||||| || ||||| ||| || Sbjct 191292 GACACAATCGACGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 191351 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | || || || ||||| ||||| | || |||| || || ||| Sbjct 191352 TAAAGACTCATTTTTGCAGGAAAGCAATTAGAAGATGGAAGAACACTTTCAGACTATAAC 191411 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| |||| || || || | || || |||||| | ||| | ||||| || Sbjct 191412 ATTTAAAAAGAATCAACTCTCCACTTAGTTTTGAGATTGAGAGGTGGAAT 191461 >seq56 Length=425007 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | |||||||||||||| | || || ||| ||||||||||||| || ||||| || Sbjct 127812 ATGTAAATATTTGTAAAAACATTAACTGGAAAGACTATTACTCTTGATGTTGAACCATCA 127753 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| |||||| |||||| ||||||| ||||| || ||||| ||| || Sbjct 127752 GACACAATTGACGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 127693 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | || || || |||| ||||| | || |||| || || ||| Sbjct 127692 TAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGACTATAAC 127633 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| |||| || || || | || || |||||| | ||| | ||||| || Sbjct 127632 ATTTAAAAAGAATCAACTCTCCACTTAGTTTTGAGATTGAGAGGTGGAAT 127583 Score = 114 bits (126), Expect = 1e-20 Identities = 176/250 (70%), Gaps = 1/250 (0%) Strand=Plus/Minus Query 26969 ATTTTTTAATTTATACGCCA-TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTA 27027 ||| || | |||| | | || || | |||||||||||||| | || || ||| |||| | Sbjct 55054 ATTATTAATTTTAAAAGACAATGTAAATATTTGTAAAAACATTAACTGGAAAGACTATCA 54995 Query 27028 CTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAG 27087 ||||||| || ||||| || ||| | ||||| |||||| |||||| ||||||| | Sbjct 54994 CTCTTGATGTTGAACCATCTGACACAATTGACGCTGTCAAAGCTAAAATTTAAGACAAGG 54935 Query 27088 AAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTT 27147 |||| || ||||| ||| || | | | || | || || || |||| ||||| | Sbjct 54934 AAGGAATCCCACCTGATTAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAA 54875 Query 27148 CGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGC 27207 || |||| || || |||||| |||| || || || | || || |||||| | ||| Sbjct 54874 GAACACTTTCAGACTATAACATTTAAAAAGAATCAACTCTCCACTTAGTTTTGAGATTGA 54815 Query 27208 GGGGTGGCAT 27217 | ||||| || Sbjct 54814 GAGGTGGAAT 54805 Score = 114 bits (126), Expect = 1e-20 Identities = 176/250 (70%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 26969 ATTTTTTAATTTATACGCCA-TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTA 27027 ||| || | |||| | | || || | |||||||||||||| | || || ||| |||| | Sbjct 55594 ATTATTAATTTTAAAAGACAATGTAAATATTTGTAAAAACATTAACTGGAAAGACTATCA 55653 Query 27028 CTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAG 27087 ||||||| || ||||| || ||| | ||||| |||||| |||||| ||||||| | Sbjct 55654 CTCTTGATGTTGAACCATCTGACACAATTGACGCTGTCAAAGCTAAAATTTAAGACAAGG 55713 Query 27088 AAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTT 27147 |||| || ||||| ||| || | | | || | || || || |||| ||||| | Sbjct 55714 AAGGAATCCCACCTGATTAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAA 55773 Query 27148 CGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGC 27207 || |||| || || |||||| |||| || || || | || || |||||| | ||| Sbjct 55774 GAACACTTTCAGACTATAACATTTAAAAAGAATCAACTCTCCACTTAGTTTTGAGATTGA 55833 Query 27208 GGGGTGGCAT 27217 | ||||| || Sbjct 55834 GAGGTGGAAT 55843 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | |||||||||||||| | || || ||| ||||||||||||| || ||||| || Sbjct 116788 ATGTAAATATTTGTAAAAACATTAACTGGAAAGACTATTACTCTTGATGTTGAACCATCA 116847 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| |||||| |||||| ||||||| ||||| || ||||| ||| || Sbjct 116848 GACACAATTGACGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 116907 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | || || || |||| ||||| | || |||| || || ||| Sbjct 116908 TAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGACTATAAC 116967 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| |||| || || || | || || || ||| | ||| | |||||| Sbjct 116968 ATTTAAAAAGAATCAACTCTCCACTTAGTCTTGAGATTGAGAGGTGGC 117015 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | |||||||||||||| | || || ||| ||||||||||||| || ||||| || Sbjct 130913 ATGTAAATATTTGTAAAAACATTAACTGGAAAGACTATTACTCTTGATGTTGAACCATCA 130972 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| |||||| |||||| ||||||| ||||| || ||||| ||| || Sbjct 130973 GACACAATTGACGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 131032 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | || || || |||| ||||| | || |||| || || ||| Sbjct 131033 TAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGACTATAAC 131092 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| |||| || || || | || || || ||| | ||| | |||||| Sbjct 131093 ATTTAAAAAGAATCAACTCTCCACTTAGTCTTGAGATTGAGAGGTGGC 131140 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || || || ||||| || || || ||| | || ||||| || || ||||| || Sbjct 240087 ATGTAAATTTTCGTTAAAACACTCACAGGAAAGACAATCACTCTCGATGTTGAACCATCA 240146 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| |||||| |||||| |||| || ||||| || ||||| ||| || Sbjct 240147 GACACAATTGACGCTGTCAAAGCTAAAATTTAAGATAAGGAAGGAATCCCACCTGATTAA 240206 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | || || || |||| ||||| | || |||| || || ||| Sbjct 240207 TAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGACTATAAC 240266 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | || || |||||| | ||| | ||||| || Sbjct 240267 ATTCAAAAAGAATCAACTCTTCACTTAGTTTTGAGATTGAGAGGTGGAAT 240316 >seq21 Length=592296 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || ||||| ||||| ||||| || ||| | || |||||||| || || || || Sbjct 450193 ATGTAAATTTTTGTTAAAACCCTGACGGGAAAGACCATCACTCTTGATGTAGAGCCATCA 450252 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| || ||| || ||| |||| || ||||| || ||||| ||| || Sbjct 450253 GACACCATTGACGCTGTTAAAGCTAAGATTTAAGATAAGGAAGGAATCCCACCTGATTAA 450312 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | || || | || || |||||| | ||||| | || |||| |||||||| Sbjct 450313 TAAAGATTGATTTTTGCAGGAAAACAACTAGAAGATGGAAGAACTCTTTCAGATTACAAT 450372 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| |||| || || ||||||||||| |||||| | || | ||||| Sbjct 450373 ATTTAAAAAGAATCAACCTTACATTTAGTTTTGAGATTAAGAGGTGG 450419 >seq23 Length=588601 Score = 105 bits (116), Expect = 6e-18 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 26977 ATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAG 27036 ||| ||| | ||| | || ||||| ||||| || || || ||| | ||||||||||| | Sbjct 76666 ATTAATAACCTATGTAAATCTTTGTTAAAACACTCACAGGAAAGACAATTACTCTTGATG 76725 Query 27037 TGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATAC 27096 | ||||| || || | ||||| || ||| ||||| ||||||| ||||| || | Sbjct 76726 TTGAACCATCTGATACTATTGATGCTGTTAAAGCTAAAATCTAAGACAAGGAAGGAATCC 76785 Query 27097 CACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTT 27156 |||||||| || | | | || | || || ||| |||| |||||| | || ||| Sbjct 76786 CACCCGATTAATAAAGACTTATCTTTGCAGGAAAATAATTAGAAGACGGAAGAACACTTT 76845 Query 27157 CCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 | || || ||||| ||||||| || || | || || |||||| | || | ||||| | Sbjct 76846 CAGACTATAACATCTAAAAGGAATCAACACTCCACTTAGTTTTGAGATTAAGAGGTGGAA 76905 Query 27217 T 27217 | Sbjct 76906 T 76906 >seq25 Length=585425 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || ||||| ||||| || || |||||| | || |||||||| || || || || Sbjct 449894 ATGTAAATTTTTGTTAAAACCCTCACAGGCAAGACCATCACTCTTGATGTTGAGCCATCT 449953 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || || || ||| ||| ||||||| ||||| || || || ||| || Sbjct 449954 GACACCATCGATGCTGTTAAGGCAAAGATTTAAGACAAGGAAGGAATCCCTCCTGATTAA 450013 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | ||||| | || || || ||||||||||| | || |||| ||||| ||| Sbjct 450014 TAAAGATTAATTTTTGCTGGAAAGCAATTGGAAGATGGAAGAACACTTTCAGATTATAAC 450073 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || |||| || || || | ||||| |||||| Sbjct 450074 ATCTAAAAAGAATCAACTCTCCATTTAGTTTTG 450106 >seq143 Length=219650 Score = 93.3 bits (102), Expect = 4e-14 Identities = 168/246 (68%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 26972 TTTTAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCT 27031 ||||| | ||| | ||||| || ||||| || || | || || || | || || || Sbjct 171668 TTTTATATCATAAGTTATGCAAATTTTTGTCAAGACCTTAACTGGAAAAACAATCACACT 171727 Query 27032 TGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 ||| || || || || ||| | ||||| |||||| |||||| ||||||||||||| Sbjct 171728 TGATGTCGAGCCATCAGACACAATTGACGCTGTCAAAGCTAAAATTTAAGACAAAGAAGG 171787 Query 27092 CATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGAC 27151 |||||||| ||| | | | | || | || || ||| |||| ||||| | || Sbjct 171788 AATACCACCTGATTAGTAAAGGCTTATTTTTGCAGGGAAATAATTAGAAGATGGAAGAAC 171847 Query 27152 CGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGG 27211 |||| || || || || ||||||| || ||| | ||||| ||||| | ||| | || Sbjct 171848 TCTTTCAGACTATAATATCTAAAAGGAATCAACCCTTCATTTAGTTTTAAGGTTGAGAGG 171907 Query 27212 TGGCAT 27217 || || Sbjct 171908 AGGTAT 171913 >seq28 Length=561789 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || ||||| || || || || || ||| | || || ||||| || || || || Sbjct 90997 ATGTAAATTTTTGTTAAGACCCTTACAGGGAAGACCATCACACTTGATGTTGAGCCATCT 90938 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || || || ||| ||| ||||||||||||| || ||||| ||| || Sbjct 90937 GATACTATCGATGCTGTTAAGGCAAAGATTTAAGACAAAGAAGGAATCCCACCTGATTAA 90878 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | || || | || || || ||||||||||| | || |||| ||||| ||| Sbjct 90877 TAAAGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGAAGAACTCTTTCAGATTATAAC 90818 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || |||| || || || | ||||| || ||| Sbjct 90817 ATCTAAAAAGAATCAACTCTCCATTTAGTATTG 90785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434915447991360