Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_028898.1 Length=35764 Score E Sequences producing significant alignments: (Bits) Value seq186 178 3e-40 >seq186 Length=19708 Score = 178 bits (196), Expect = 3e-40 Identities = 369/544 (68%), Gaps = 4/544 (1%) Strand=Plus/Plus Query 24490 GTTTTCCATCAAGTAAGGTTGCCATCGGTGTTCTGCCACAGCACATTTTTCCTTGA-TGT 24548 ||||| |||| | |||||| ||| |||||| ||||| |||| || ||| || ||| Sbjct 8242 GTTTTGCATCCATGAAGGTTTGCATTGGTGTTTTGCCATAGCA-ATGCCTCCCCGAATGT 8300 Query 24549 GTTCGATGGTGATTATAATACATTAACCACTCATCTAAATCCGCTTGTAATGTCGTTAAA 24608 | ||| | |||||| | | ||| ||| | ||| | ||||| || | || Sbjct 8301 GGGCGAAATTCATTATATTTGCGCATCCATAAATCAAGATCAACCTGTAAC-TCCTCAAG 8359 Query 24609 TCCG-TATAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATG 24667 | | |||| | ||| || || |||| ||| ||||| |||| | || || ||||| Sbjct 8360 TGAGGTATAGACTTTTTTTCTGAATGTCACGCTATAAAACTCTTCTTTTATAGTCTTATG 8419 Query 24668 GAACCGTTCGCAGATGCCGTTAGTCTGCGGATGTTTTACCTTGGTTTTACTGTGTTCAAT 24727 || ||||| || || || ||||| || ||||| | |||||||| ||||| ||||| Sbjct 8420 AAAGCGTTCACAAATTCCATTAGTTTGAGGATGGCGGGCTTTGGTTTTGCTGTGATCAAT 8479 Query 24728 ATCATTTATTGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACT 24787 ||| | || ||| | ||| || | ||| | ||| |||| | |||||||||||| | Sbjct 8480 ATCCTCTAATGCAAGATATAGTTGATATGCATGACTTTCAATTAAACCACAATATTCAGT 8539 Query 24788 TCCTCGGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACAC 24847 || | |||||||| | | ||||| |||| | |||| || ||| |||| | || Sbjct 8540 CCCCCTATCAGTTAAAACTCTTAACAATGGTACATCTTGTTCTTGAAACCATGGAAGAAC 8599 Query 24848 TTTATCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAA 24907 | ||||| | || || | | ||||| || ||| ||||| | || ||| || Sbjct 8600 CCTCTCATTTAATGCATGAGCGGATGTAATAGCTGTTTTCTCAGTATATAATTGTGCGAA 8659 Query 24908 CGCCACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAG 24967 || || | || || |||||||| ||||| || || ||||| || || ||||| | Sbjct 8660 TGCAACCCGAGAATAGGTGTCAATAAAAGTTTGCTGGTAGATACGTCCTACACCTTTCAT 8719 Query 24968 GTTGCCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTGCCGTTTCAATTTC 25027 | | || ||| | |||| || ||||| |||||||||||||| || | ||||| ||||| Sbjct 8720 GGTTCCGACAAAATAAGTGTCCTGTGAACCAAGATAGCCAGGATGCTCGGTTTCGATTTC 8779 Query 25028 ACCA 25031 |||| Sbjct 8780 ACCA 8783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114322462829716