Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq59 114 1e-20 >seq59 Length=418960 Score = 114 bits (126), Expect = 1e-20 Identities = 284/425 (67%), Gaps = 12/425 (3%) Strand=Plus/Minus Query 125970 ATCAATTCTAAATCTTCATAATTAATATCAAAAATTGATTTATCTGTATTAATTTTTAAT 126029 |||||||| ||||| |||||| || |||||| | | |||| |||||||| | Sbjct 374998 ATCAATTCAAAATCATCATAAGTATAATCAAACAATCCCTTATTACCTTTAATTTTAA-- 374941 Query 126030 TGAGGTGGTA---GATAACTATCTCTTGATAATTGTGTATGTATTGCATCCATATGATTG 126086 || ||| | |||| |||| || || | | || ||||| | |||||| Sbjct 374940 -GAATTGGAAAAGGATATGGGATTCTTTGTATTTATCCTTTTAAAGCATCTACATGATTA 374882 Query 126087 GAATAAATATGTGCATCTCCAAATGTATGAATGAATTCACCCACCT-CAAGTCCACATTC 126145 ||||||||||| ||| || || |||||| ||||| || | | ||| | ||||| Sbjct 374881 CTATAAATATGTGTATCACCTAAAACATGAATAAATTCTCCTAAATTCAAATTG-CATTC 374823 Query 126146 TTTTGCAACAAGATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACACCTAAAAA 126205 ||||||| | || ||| | ||| |||||||| ||||||||||| || | |||||| Sbjct 374822 CTTTGCAAGCATATATGTTAATAAGGCATAACTAGCAATATTGAATGGTATTCCTAAACC 374763 Query 126206 TATATCAGCACTTCTTTGATATAATTGACAATTTAATTTACCCTCTTGTACGTAAAATTG 126265 | |||| ||| | ||| | ||| | |||||||| | | ||| |||||| Sbjct 374762 AAAATCACATGATCTCTAATACATCATGCAACTCAATTTACCATTTGCTACAAAAAATTA 374703 Query 126266 AAACATTGTGTGGCAAGGTGGTAATGCCATTGAATCGATTTCAGTAGGATTCCATGCTGA 126325 ||||| || |||||||| |||||||| | | | || |||||||||| || | Sbjct 374702 CGACATTACATGACAAGGTGGCAATGCCATCTATTTTAAATCGCTAGGATTCCAAGCCG- 374644 Query 126326 AACAATGTGA--CGTCGAGAGTTTGGATTGGTTTTAATTTGTTGTATAACTGATTTTAAT 126383 ||||| | | | || | |||||||| |||||| || || ||||| ||||| | Sbjct 374643 -ACAATATAATTCTTCTACTATTTGGATTATTTTTAAGTTATTAAATAACATCTTTTACT 374585 Query 126384 TGATC 126388 | ||| Sbjct 374584 TAATC 374580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408595695972401