Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq21 118 7e-22 seq56 107 1e-18 seq25 107 1e-18 seq143 95.1 8e-15 seq28 91.5 1e-13 >seq21 Length=592296 Score = 118 bits (130), Expect = 7e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 ||| ||| | ||||| ||||||||||| |||||||| || |||||||| || || || | Sbjct 450189 TAATATGTAAATTTTTGTTAAAACCCTGACGGGAAAGACCATCACTCTTGATGTAGAGCC 450248 Query 23667 CACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAG 23725 | ||||| |||| | ||||| | || ||| || || ||||| | || || | Sbjct 450249 ATCAGACACCATTGACGCTGTTAAAGC-TAAGATTTAAGATAAGGAAGGAATCCCACCTG 450307 Query 23726 ATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATT 23785 || || | | || || ||||| || |||||||| ||||| | | | ||| | |||| Sbjct 450308 ATTAATAAAGATTGATTTTTGCAGGAAAACAACTAGAAGATGGAAGAACTCTTTCAGATT 450367 Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||| || ||||||| || || |||||||||||||| || || |||| || Sbjct 450368 ACAATATTTAAAAAGAATCAACCTTACATTTAGTTTTGAGATTAAGAGGTGG 450419 >seq56 Length=425007 Score = 107 bits (118), Expect = 1e-18 Identities = 170/242 (70%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 23599 TAATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAA 23658 |||||| |||||| | |||||||||||||| ||||| ||||| || ||||||||||| Sbjct 240075 TAATTATAAAAAATGTAAATTTTCGTTAAAACACTCACAGGAAAGACAATCACTCTCGAT 240134 Query 23659 GTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTA 23718 ||||| | | ||||| |||| | ||| |||||| || || ||||| | Sbjct 240135 GTTGAACCATCAGACACAATTGACGCTGTCAAAGCTAAAATTTAAGATAAGGAAGGAATC 240194 Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTT 23776 || || ||| || | | | || ||||| || || || | ||||| | | | ||||| Sbjct 240195 CCACCTGATTAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTT 240254 Query 23777 TAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAG 23836 | || || ||||| |||||||| || || | || |||||||| || ||| |||| | Sbjct 240255 T--CAGACTATAACATTCAAAAAGAATCAACTCTTCACTTAGTTTTGAGATTGAGAGGTG 240312 Query 23837 GA 23838 || Sbjct 240313 GA 240314 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||| | ||||||||||| ||| | || ||||| || |||||||| || ||||| | | Sbjct 54807 AATGTAAATTTTCGTTAAGACCTTGACTGGAAAGACCATCACTCTTGATGTTGAACCATC 54748 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | ||| |||||| ||||| ||||| | || || ||| | Sbjct 54747 TGACACAATTGACGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTA 54688 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 | | | | || ||||| || || || | ||||| | | | |||||| || || Sbjct 54687 ATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTT--CAGACTAT 54630 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||| ||||||| || || | || |||||||| || ||| |||| ||| Sbjct 54629 AACATTTAAAAAGAATCAACTCTCCACTTAGTTTTGAGATTGAGAGGTGGA 54579 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||| | ||||||||||| ||| | || ||||| || |||||||| || ||||| | | Sbjct 240542 AATGTAAATTTTCGTTAAGACCTTGACTGGAAAGACCATCACTCTTGATGTTGAACCATC 240601 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | ||| |||||| || || ||||| | || || ||| | Sbjct 240602 AGACACAATTGACGCTGTCAAAGCTAAAATTTAAGATAAGGAAGGAATCCCACCTGATTA 240661 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 | | | | || ||||| || || || | ||||| | | | |||||| || || Sbjct 240662 ATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTT--CAGACTAT 240719 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||| ||||||| || || | || |||||||| || ||| |||| ||| Sbjct 240720 AACATTTAAAAAGAATCAACTCTTCACTTAGTTTTGAGATTGAGAGGTGGA 240770 >seq25 Length=585425 Score = 107 bits (118), Expect = 1e-18 Identities = 167/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 ||| ||| | ||||| |||||||||||||| || || || |||||||| || ||||| | Sbjct 449890 TAATATGTAAATTTTTGTTAAAACCCTCACAGGCAAGACCATCACTCTTGATGTTGAGCC 449949 Query 23667 CACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAG 23725 | ||||| | || | |||| |||| | || ||||| ||||| | || || | Sbjct 449950 ATCTGACACCATCGATGCTGTTAAGGCAAAGATTTAA-GACAAGGAAGGAATCCCTCCTG 450008 Query 23726 ATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGA 23783 || || | | ||||| ||||| || || ||| ||||||| | | | |||||| | | Sbjct 450009 ATTAATAAAGATTAATTTTTGCTGGAAAGCAATTGGAAGATGGAAGAACACTTTCAG--A 450066 Query 23784 TTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| ||||||| || || | ||||||||||| || | ||||||| Sbjct 450067 TTATAACATCTAAAAAGAATCAACTCTCCATTTAGTTTTGAGACTTAGAGGAGG 450120 >seq143 Length=219650 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || ||| | || |||||||| ||||| || || || || | | Sbjct 171684 ATGCAAATTTTTGTCAAGACCTTAACTGGAAAAACAATCACACTTGATGTCGAGCCATCA 171743 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | ||| |||||| ||||||||||| |||| || ||| | Sbjct 171744 GACACAATTGACGCTGTCAAAGCTAAAATTTAAGACAAAGAAGGAATACCACCTGATTAG 171803 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 | | | || ||||| || ||| || | ||||| | | | ||| | || || || Sbjct 171804 TAAAGGCTTATTTTTGCAGGGAAATAATTAGAAGATGGAAGAACTCTTTCAGACTATAAT 171863 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||| || || || | |||||||||||||||||| ||||||| Sbjct 171864 ATCTAAAAGGAATCAACCCTTCATTTAGTTTTAAGGTTGAGAGGAGG 171910 >seq28 Length=561789 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 ||| ||| | ||||| ||||| ||||| || || || || ||||| || || ||||| | Sbjct 91001 TAATATGTAAATTTTTGTTAAGACCCTTACAGGGAAGACCATCACACTTGATGTTGAGCC 90942 Query 23667 CACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAG 23725 | || ||| | || | |||| |||| | || ||||||||||| | || || | Sbjct 90941 ATCTGATACTATCGATGCTGTTAAGGCAAAGATTTAA-GACAAAGAAGGAATCCCACCTG 90883 Query 23726 ATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATT 23785 || || | | || || ||||| || || ||| ||||||| | | | ||| | |||| Sbjct 90882 ATTAATAAAGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGAAGAACTCTTTCAGATT 90823 Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | ||||| ||||||| || || | |||||||| || || | ||||||| Sbjct 90822 ATAACATCTAAAAAGAATCAACTCTCCATTTAGTATTGAGACTCAGAGGAGG 90771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007363115844