Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq75 230 2e-55 seq80 215 4e-51 seq101 96.9 3e-15 >seq75 Length=370783 Score = 230 bits (254), Expect = 2e-55 Identities = 524/782 (67%), Gaps = 15/782 (2%) Strand=Plus/Plus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 || ||| ||||| ||| || ||||| ||||||||||||||||||| |||| || Sbjct 196164 ACTCCAGCTTTTTAGTAATCTCCTACTCTTCTTTCGAAGAAATTAGTTTTACCTTACAAT 196223 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTA-ATGTTTTTCACACTTTAG 4366 || || | ||||| | ||||| ||||| ||| ||||| || || ||| | | Sbjct 196224 GATATCATATCCATCCATTCAAAAGGATTCTTTGAATTGTATATTTTAGGTGCACCTAAT 196283 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 || | | | || || || |||||||| ||||| | |||| | | | || || Sbjct 196284 -GCAAATATTAGTCTATCTGCAACAAATTCAATATATTATTTCATTAAATTAGAATTCAT 196342 Query 4427 TCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTC 4486 |||||||||| || |||| || | | | ||| |||| ||| || || || Sbjct 196343 TCCAATTAATTCGACTGGTAAAGCTTCGCTTATAAATTCTTTTTCAATTTCAACTGCGGA 196402 Query 4487 TGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAA 4546 || || || || | ||| | ||| |||||||||||||| | | | | Sbjct 196403 TGATATAATTTCATGAATTCGTTGATTACTCAATTTATTTACTAAGTGTTTGTAAAGAAG 196462 Query 4547 ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAA 4606 ||| ||||||||| ||| | |||||| ||||| ||| | ||| || ||||| |||| Sbjct 196463 ACAAGCAAAATCAGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAATGTTAG 196522 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 ||| ||||| || ||||||||| | ||| ||||| || |||||| ||||||||||| Sbjct 196523 TCCTGGCATCAATGATCTCTTTTTTATCCAGAATATTGCACAAAATGAACCAGAAAAGAA 196582 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT 4726 || ||||| || || ||||| || | ||||| | || || | | || | || Sbjct 196583 AATACCTTCAACTGCAGCAAAAGCAATTAATCTTTCAGCAAATGA---GTCATTTTAGTT 196639 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCT---TAAC--GCACGGAATTGTGTATATA 4781 |||||||| | ||||| | ||||| || | |||| |||| || | | ||| Sbjct 196640 TATCCATTTCATAGCCCACATTGCTTTCTTTTATATAACAGGCAC---AT--TATCAATA 196694 Query 4782 GCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTA 4841 || | || | | | |||||||| | || ||||||||| || |||| || Sbjct 196695 GCATGAAGAAGGTAATTTTTTTCATTTTCATCAGTAATATAAGTATCAATTAAAAGTGAG 196754 Query 4842 TACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCT 4901 || |||| || || |||||||| || || || | |||||| ||||| ||||| |||||| Sbjct 196755 TAAGTTTCTGAGTGAATATTTTCCATTGCTATTTAAAATCCATAAAAACATCTTGCTTCT 196814 Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTG 4961 | ||||||||||| |||| ||| || | || ||||| || || || || ||||| Sbjct 196815 GGAACTTGAACTTCAGTACAGAATTATTAAGCCAAATTTTCATTCACAATGCCATCACTT 196874 Query 4962 GCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTC 5021 |||||||| || || | |||| |||||||| | ||| || | | ||||||| | Sbjct 196875 GCTGCAAAGAAAGCAAGCACATACTTTATAAAGTGTTTTTCATCTGCTGTTAGTTTTTCC 196934 Query 5022 CA 5023 || Sbjct 196935 CA 196936 >seq80 Length=351589 Score = 215 bits (238), Expect = 4e-51 Identities = 502/749 (67%), Gaps = 11/749 (1%) Strand=Plus/Minus Query 4279 TTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATTAG 4338 ||||||||||||| ||||| |||| ||| || || | ||||| | ||||| ||||| Sbjct 175287 TTTCGAAGAAATTTGTTTTACCTTATAAGGATATCATATCCATCCATTCAAAAGGATTCT 175228 Query 4339 TTGCGTTGTAATGTTTTTCACACTT-TAGAGCTACAAGCAATCGGTCAGCTACAAATTCT 4397 ||| ||||| | |||| || || || | | |||| || || ||||||||| Sbjct 175227 TTGAATTGTA-TATTTTAGGTGCTCCTAAAGAAAATATTAATCTATCTGCAACAAATTCT 175169 Query 4398 ATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGTC 4457 ||||| | |||| | | | || ||||| |||||| || |||| || | | Sbjct 175168 ATATATTATTTCATTAAATTAGAATTCATTCCGATTAATTCAACTGGTAAAGCTTCACTA 175109 Query 4458 AAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGAT 4517 | ||| |||| ||| || || ||| || || || | | ||| | ||| Sbjct 175108 ATAAATTCTTTTTCAATTTCAACAGCTGATGAAATAATTTAATGAATTCGTTGATTACTC 175049 Query 4518 GGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCT 4577 |||||| | | | | | | | | ||| ||||||||| || | ||||| ||| Sbjct 175048 AATTTATTAATCATATGTTTATATAGGAGACAAGCAAAATCAGTGTGAAGTCCTTCATCT 174989 Query 4578 CTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAA 4637 || || ||||| || ||||| || | ||| |||||||| ||| ||||| | |||| Sbjct 174988 CTTGATATAAGTTCATTTGAAAAGGTAAGTCCAGGCATTAATGATCTTTTTTTGATCCAA 174929 Query 4638 AATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAAT 4697 || || || |||||| ||||||||||| |||||||| || || ||||| || | |||| Sbjct 174928 AAAATGGCACAAAATGAACCAGAAAAGAAGATGCCTTCAACAGCAGCAAAAGCGATTAAT 174869 Query 4698 CGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTC 4757 | | || || | || | |||||||| || | |||||| | |||||||| Sbjct 174868 CTTTCAGCAAATGAAT---CATTCTAATTAATCCACTTCATTGCCCACATTGCTTTTTTT 174812 Query 4758 T-TAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTG 4816 | || || |||| ||| ||||| | | | | | |||||||| | || Sbjct 174811 TGTATAACA-GGAACATTGTCAATAGCATGTAGAAGATAATTTTTTTCATTTTCATCAGT 174753 Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876 || |||||||| || | || ||| |||| ||||||||||| || ||||| || | Sbjct 174752 TATGTAAGTGTCAATCAAAAGAGAATAAGTTTCTGAATGTATATTCTCCATAGCTATTTA 174693 Query 4877 AAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTA--CT 4934 ||||| ||||| ||||| ||||||| | ||||||||| ||||||| || ||| || Sbjct 174692 GAATCCATAAAAACATCTGGCTTCTGGAATTTGAACTTCAGTACAAAA--TTACTAAGCT 174635 Query 4935 AAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAG 4994 | |||||| ||||| ||||| ||||| |||||||| || || | |||| |||||| Sbjct 174634 AGGTTTTCATTTACAATACCATCACTTGCTGCAAAGAAAGCAAGGACATACTTTATAAAA 174575 Query 4995 TACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 | | |||||| | | || |||| ||| Sbjct 174574 TGTTTTTCGTCTGCAGTGAGCTTTTCCCA 174546 >seq101 Length=298569 Score = 96.9 bits (106), Expect = 3e-15 Identities = 176/255 (69%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 31822 AGCTCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGA 31881 ||| ||| | ||||||||||||| ||| ||||||| ||||| ||||| || ||||| || Sbjct 148452 AGCACCTCGTTCTGGATTGGCAGCAAAAAACTTTATAGACGTAGGTGCAGGAGTTATTGA 148511 Query 31882 TTCAGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAAAAATCATACAG 31941 | ||| ||||||||| | || | || | || |||||||||||||| | | || Sbjct 148512 TGAAGATTATAGAGGAGAAATTTGTGTTCTCTTATTTAATTTTGGAGATTAGGATTTCAA 148571 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAAT 32001 |||| | || ||||| || |||||| | || ||| | ||| || | |||| Sbjct 148572 AGTAAATTATGGGGATAGAGTTGCTCAAATGATAGTTGAATATGTAGTAAAAACTGAAAT 148631 Query 32002 AGAAGTAGCTAATTATCTAGATTG-CACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCG 32060 ||| | || || || | || || || ||||||| | ||| |||||||| || | Sbjct 148632 TTAAGAAACTGATAAT-TTGAGTGAGACATAAAGAGGAGAAGGAGGTTTTGGATCAACTG 148690 Query 32061 G----AAATTAATTT 32071 | |||||||||| Sbjct 148691 GAGTCAAATTAATTT 148705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427046773865819