Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq56 96.9 8e-15 seq21 96.9 8e-15 seq25 93.3 1e-13 seq37 91.5 3e-13 seq23 84.2 5e-11 >seq56 Length=425007 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 |||||||| || |||||||| ||||| || || | | ||||| |||||||||| Sbjct 240289 TGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTAC 240230 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || || || | | || | | |||||||||||| |||| |||||| Sbjct 240229 TTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTATCTTAAATTTTA 240170 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||||| || | ||||||| || || || ||||| || || || || ||| Sbjct 240169 GCTTTGACAGCGTCAATTGTGTCTGATGGTTCAACATCGAGAGTGATTGTCTTTCCTGTG 240110 Query 152082 AGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||||| | | |||||| Sbjct 240109 AGTGTTTTAACGAAAATTTACATTTT 240084 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| | ||| | ||||| || || ||||||| ||||| || || | | ||||| || Sbjct 240986 TCTTAAGACTAAGTGAAGTGTTGATTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCC 240927 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||||| || || ||||| || || || | | || | | |||||||||||| Sbjct 240926 ATCTTCTAATTACTTTCCTGCGAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTT 240867 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||| |||||| |||||||| || | ||||||| || || |||||||| || Sbjct 240866 GTCTTAAATTTTAGCTTTGACAGCATCAATTGTGTCTGATGGTTCGACGTCAAGAGTGAT 240807 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAA 152095 ||||| || || | ||||| ||||| Sbjct 240806 TGTTTTTCCAGTCAATGTCTTAACGAA 240780 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 |||||||| || ||||||| ||||| || || | | ||||| |||||||||| Sbjct 240745 TGAAGAGTTGATTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTAC 240686 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || || || | | || | | |||||||||||| |||| |||||| Sbjct 240685 TTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTATCTTAAATTTTA 240626 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||||| || | ||||||| || || |||||||| || || || || || Sbjct 240625 GCTTTGACAGCGTCAATTGTGTCTGATGGTTCAACATCAAGAGTGATGGTCTTTCCAGTC 240566 Query 152082 AGAGTCTTCACGAA 152095 | ||||| ||||| Sbjct 240565 AAGGTCTTAACGAA 240552 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| | ||| | || ||||| || ||||||| ||||| || || | | ||||| || Sbjct 117003 TCTCAAGACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCC 116944 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||||| || || || || || || || | | || | | |||||||||||| Sbjct 116943 ATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTT 116884 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||| |||||| |||||||| || | ||||||| || || ||||||||||| Sbjct 116883 GTCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAACATCAAGAGTAAT 116824 Query 152069 AGTTTTGCCCGT 152080 ||| || || || Sbjct 116823 AGTCTTTCCAGT 116812 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| | ||| | || ||||| || ||||||| ||||| || || | | ||||| || Sbjct 127369 TCTCAAGACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCC 127428 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||||| || || || || || || || | | || | | |||||||||||| Sbjct 127429 ATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTT 127488 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||| |||||| |||||||| || | ||||||| || || |||||||| || Sbjct 127489 GTCTTAAATTTTAGCTTTGACAGCATCAATTGTGTCTGATGGTTCGACGTCAAGAGTGAT 127548 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAA 152095 || || || || | ||||| ||||| Sbjct 127549 TGTCTTTCCAGTCAAGGTCTTAACGAA 127575 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| | ||| | || ||||| || ||||||| ||||| || || | | ||||| || Sbjct 131128 TCTCAAGACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCC 131069 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||||| || || || || || || || | | || | | |||||||||||| Sbjct 131068 ATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTT 131009 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||| |||||| |||||||| || | ||||||| || || ||||||||||| Sbjct 131008 GTCTTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAACATCAAGAGTAAT 130949 Query 152069 AGTTTTGCCCGT 152080 ||| || || || Sbjct 130948 AGTCTTTCCAGT 130937 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| | ||| | ||||| || || ||||||| ||||| || || | | |||||| || Sbjct 240530 TCTTAAGACTAAGTGAAGTGTTGATTCTTTTTAAATGTTATAGTCTGAAAGAGTTCTTCC 240471 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||||| || || || || || || || | | || | | |||||||||||| Sbjct 240470 ATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTT 240411 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||| |||||| |||||||| || | ||||||| || || |||||||| || Sbjct 240410 GTCTTAAATTTTAGCTTTGACAGCATCAATTGTGTCTGATGGTTCAACATCAAGAGTGAT 240351 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAA 152095 || || || || | ||||| || || Sbjct 240350 GGTCTTTCCAGTCAAGGTCTTAACAAA 240324 Score = 84.2 bits (92), Expect = 5e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || ||||| || ||||||| ||||| || || | | ||||| |||||||||| Sbjct 127610 TGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTAC 127669 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || || || | | || | | |||||||||||| |||| |||||| Sbjct 127670 TTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTA 127729 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 |||||||| || | ||||||| || || |||||||||||||| || || || Sbjct 127730 GCTTTGACAGCGTCAATTGTGTCTGATGGTTCAACATCAAGAGTAATAGTCTTTCCAGT 127788 >seq21 Length=592296 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || ||||||| || |||||||| | | |||||| ||||||||||| ||| || Sbjct 450389 GTTGATTCTTTTTAAATATTGTAATCTGAAAGAGTTCTTCCATCTTCTAGTTGTTTTCCT 450330 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || | || | | || | | |||||||||||| |||| ||| || ||| Sbjct 450329 GCAAAAATCAATCTTTATTAATCAGGTGGGATTCCTTCCTTATCTTAAATCTTAGCTTTA 450270 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 |||| || | | ||||||| |||||| |||||||| || || || ||||| || || Sbjct 450269 ACAGCGTCAATGGTGTCTGATGGCTCTACATCAAGAGTGATGGTCTTTCCCGTCAGGGTT 450210 Query 152088 TTCACGAAGACCTGCATTTTA 152108 || || || | | ||| ||| Sbjct 450209 TTAACAAAAATTTACATATTA 450189 >seq25 Length=585425 Score = 93.3 bits (102), Expect = 1e-13 Identities = 158/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| | || | ||| ||||| || ||||||| |||||| ||||| | | ||| Sbjct 450114 CTAAGTCTCAAAACTAAATGGAGAGTTGATTCTTTTTAGATGTTATAATCTGAAAGTGTT 450055 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || |||||||| | ||||| || || || || | || | | || | | ||||| Sbjct 450054 CTTCCATCTTCCAATTGCTTT--CCAGCAAAAATTAATCTTTATTAATCAGGAGGGATTC 449997 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 ||||||| |||| ||| ||| || |||| || | | |||| || ||| || |||| Sbjct 449996 CTTCCTTGTCTTAAATCTTTGCCTTAACAGCATCGATGGTGTCAGATGGCTCAACATCAA 449937 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108 |||| || || ||||| ||||| || || || || | | ||| ||| Sbjct 449936 GAGTGATGGTCTTGCCTGTGAGGGTTTTAACAAAAATTTACATATTA 449890 >seq37 Length=526299 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GC 151959 || ||||| || ||||||| ||||| || || | | ||||| |||||||||| || Sbjct 191434 TGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTGC 191375 Query 151960 TTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTT 152019 ||| || || || || || || | | || | | |||||||||||| |||| ||||| Sbjct 191374 TTT--CCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTT 191317 Query 152020 TTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCG 152079 | |||||||| || | ||||||| || || |||||||| ||||| || || | Sbjct 191316 TAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAACATCAAGAGTGATAGTCTTTCCAG 191257 Query 152080 TGAGAGTCTTCACGAAGACCTGCATTTT 152107 | | || || || || | |||||||| Sbjct 191256 TTAATGTTTTTACAAATATTTGCATTTT 191229 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GC 151959 || ||||| || ||||||| ||||| || || | | ||||| |||||||||| || Sbjct 195127 TGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTGC 195068 Query 151960 TTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTT 152019 ||| || || || || || || | | || | | |||||||||||| |||| ||||| Sbjct 195067 TTT--CCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTT 195010 Query 152020 TTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCG 152079 | |||||||| || | ||||||| || || |||||||| ||||| || || | Sbjct 195009 TAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAACATCAAGAGTGATAGTCTTTCCAG 194950 Query 152080 TGAGAGTCTTCACGAAGACCTGCATTT 152106 | | || || || || | ||||||| Sbjct 194949 TTAATGTTTTTACAAATATTTGCATTT 194923 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GC 151959 || || || || ||||||| ||||| || || | | ||||| |||||||||| || Sbjct 197443 TGGAGGGTTGATTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTGC 197384 Query 151960 TTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTT 152019 ||| || || || || || || | | || | | |||||||||||| |||| ||||| Sbjct 197383 TTT--CCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTT 197326 Query 152020 TTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCG 152079 | |||||||| || | ||||||| || || |||||||| ||||| || || | Sbjct 197325 TAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAACATCAAGAGTGATAGTCTTTCCAG 197266 Query 152080 TGAGAGTCTTCACGAAGACCTGCATTTT 152107 | | || || || || | |||||||| Sbjct 197265 TTAATGTTTTTACAAATATTTGCATTTT 197238 >seq23 Length=588601 Score = 84.2 bits (92), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| | ||| | ||||| || || || |||| ||| || || || | | ||||| || Sbjct 77120 TCTCAAGACTAAGTGAAGTGTTGATTCCTTTTAGATATTATAGTCTGAGAGTGTTCTTCC 77061 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 ||||||| ||| || || |||||||| || | | || | | |||||||||||| Sbjct 77060 GTCTTCTAATTATTTTCCTGCAAAGATAAGTCTTTATTAATCGGGTGGGATTCCTTCCTT 77001 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||| ||||| ||| |||| || | | || || || || |||||||| || Sbjct 77000 GTCTTAGATTTTAGCTTTAACAGCATCAATAGTATCAGATGGTTCAACATCAAGAGTGAT 76941 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC-CTTACTCT 152118 || || || ||||| ||||| ||||| | | |||| ||| |||| ||| Sbjct 76940 TGTCTTTCCTGTGAGTGTCTTGACGAAAATTTACATTCCACCTCTTAATCT 76890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153812772652353