Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq56 127 4e-24 seq21 122 2e-22 >seq56 Length=425007 Score = 127 bits (140), Expect = 4e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||||| ||||| ||||| | ||| || | ||||| |||| || || || ||||| Sbjct 127393 TTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAA 127452 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | || || ||| || || || |||||||||| || || ||||| || | Sbjct 127453 AATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACAGC 127512 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||| || ||||| || | |||||| || |||||||| ||||| || ||||| |||||||| Sbjct 127513 ATCAATTGTGTCTGATGGTTCGACGTCAAGAGTGATTGTCTTTCCAGTCAAGGTCTTAAC 127572 Query 283088 GAATATCTGCATT 283100 |||||| | |||| Sbjct 127573 GAATATTTACATT 127585 Score = 118 bits (130), Expect = 2e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||||| ||||| ||||| | ||| || | ||||| |||| || || || ||||| Sbjct 54387 TTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAA 54446 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | || || ||| || || || |||||||||| || || ||||| || | Sbjct 54447 AATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACAGC 54506 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| || | ||| || || |||||||| ||||| || ||||| |||||||| Sbjct 54507 GTCAATTGTGTCAGATGGTTCAACATCAAGAGTGATGGTCTTTCCAGTCAAGGTCTTAAC 54566 Query 283088 GAATATCTGCATT 283100 |||||| | |||| Sbjct 54567 GAATATTTACATT 54579 Score = 114 bits (126), Expect = 3e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||||| ||||| ||||| | ||| || | ||||| |||| || || || ||||| Sbjct 54615 TTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAA 54674 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | || || ||| || || || |||||||||| || || ||||| || | Sbjct 54675 AATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACAGC 54734 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| || | ||| || || |||||||| ||||| || ||||| |||||||| Sbjct 54735 GTCAATTGTGTCAGATGGTTCAACATCAAGAGTGATGGTCTTTCCAGTCAAGGTCTTAAC 54794 Query 283088 GAATATCTGCATT 283100 ||| || | |||| Sbjct 54795 GAAAATTTACATT 54807 Score = 114 bits (126), Expect = 3e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||||| ||||| ||||| | ||| || | ||||| |||| || || || ||||| Sbjct 56033 TTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAA 55974 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | || || ||| || || || |||||||||| || || ||||| || | Sbjct 55973 AATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACAGC 55914 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| || | ||| || || |||||||| ||||| || ||||| |||||||| Sbjct 55913 GTCAATTGTGTCAGATGGTTCAACATCAAGAGTGATGGTCTTTCCAGTCAAGGTCTTAAC 55854 Query 283088 GAATATCTGCATT 283100 ||| || | |||| Sbjct 55853 GAAAATTTACATT 55841 Score = 114 bits (126), Expect = 3e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||||| ||||| ||||| | ||| || | ||||| |||| || || || || || Sbjct 240962 TTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCGAA 240903 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | || || ||| || || || |||||||||| || || ||||| || | Sbjct 240902 AATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACAGC 240843 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||| || ||||| || | |||||| || |||||||| || || || ||||| |||||||| Sbjct 240842 ATCAATTGTGTCTGATGGTTCGACGTCAAGAGTGATTGTTTTTCCAGTCAATGTCTTAAC 240783 Query 283088 GAATATCTGCATT 283100 ||| || | |||| Sbjct 240782 GAAAATTTACATT 240770 Score = 109 bits (120), Expect = 1e-18 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||||||||| ||||| ||||| | ||| || | ||||| |||| || || || ||||| Sbjct 240278 TTCTTTTTGAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAA 240219 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | || || ||| || || || ||||| |||| || || ||||| || | Sbjct 240218 AATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTATCTTAAATTTTAGCTTTGACAGC 240159 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| || | ||| || ||||||||||| ||||| || || | || ||||| Sbjct 240158 GTCAATTGTGTCTGATGGTTCAACATCGAGAGTGATTGTCTTTCCTGTGAGTGTTTTAAC 240099 Query 283088 GAATATCTGCATTTT 283102 ||| || | |||||| Sbjct 240098 GAAAATTTACATTTT 240084 Score = 109 bits (120), Expect = 1e-18 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||||| ||||| ||||| | ||| || | ||||| |||| || || || ||||| Sbjct 240734 TTCTTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAA 240675 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | || || ||| || || || ||||| |||| || || ||||| || | Sbjct 240674 AATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTATCTTAAATTTTAGCTTTGACAGC 240615 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| || | ||| || || |||||||| ||||| || ||||| |||||||| Sbjct 240614 GTCAATTGTGTCTGATGGTTCAACATCAAGAGTGATGGTCTTTCCAGTCAAGGTCTTAAC 240555 Query 283088 GAATATCTGCATT 283100 ||| || | |||| Sbjct 240554 GAAAATTTACATT 240542 >seq21 Length=592296 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 282896 ATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTG 282955 |||||| || |||||||| || ||||| || | ||| || | ||||| |||||||| Sbjct 450396 ATGTAAGGTTGATTCTTTTTAAATATTGTAATCTGAAAGAGTTCTTCCATCTTCTAGTTG 450337 Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 ||| || ||||| ||||| | || || ||| || || || ||||| |||| ||||| Sbjct 450336 TTTTCCTGCAAAAATCAATCTTTATTAATCAGGTGGGATTCCTTCCTTATCTTAAATCTT 450277 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||||| || | || || ||||| || | || || || |||||||| ||||| ||||| Sbjct 450276 AGCTTTAACAGCGTCAATGGTGTCTGATGGCTCTACATCAAGAGTGATGGTCTTTCCCGT 450217 Query 283076 CAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||| || || | ||| || Sbjct 450216 CAGGGTTTTAACAAAAATTTACATATT 450190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046731917639122