Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq75 360 2e-94 seq80 325 4e-84 seq142 96.9 4e-15 seq131 82.4 8e-11 >seq75 Length=370783 Score = 360 bits (398), Expect = 2e-94 Identities = 641/933 (69%), Gaps = 47/933 (5%) Strand=Plus/Plus Query 23201 TATTCATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTAC 23260 || |||| || || ||||| || || || || | ||||||||| ||||| || |||| Sbjct 196156 TACTCATTACTCCAGCTTTTTAGTAATCTCCTACTCTTCTTTCGAAGAAATTAGTTTTAC 196215 Query 23261 CCTCTAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTAC 23320 | | |||||||| | ||||| | ||||| ||||| | ||| |||| |||| Sbjct 196216 CTTACAATGATATCATATCCATCCATTCAAAAGGATTCTTTGAATTGTATAT---TTTAG 196272 Query 23321 ATGA---TAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAAT 23377 || |||| | || || |||||||| |||||||||||||||| ||| |||| Sbjct 196273 GTGCACCTAATGCAAATATTAGTCTATCTGCAACAAATTCAATATATTATTTCATTAAAT 196332 Query 23378 CATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGG 23437 | | || || || |||| || ||||| | || || || ||| ||||||||| Sbjct 196333 TAGAATTCATTCCAATTAATTCGACTGGTAAAGCTTCGCTTATAAATTCTTTTTCAATTT 196392 Query 23438 AAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACT 23497 ||| || | || |||| | ||| || | ||| | || | ||| | | Sbjct 196393 CAACTGCGGATGATATAATTTCATGAATTCGTTGATTACTCAATTTATTTACTAAGTGTT 196452 Query 23498 TAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAG 23557 | | | | ||| ||||||||| ||| || |||||||| || ||| |||||||| | Sbjct 196453 TGTAAAGAAGACAAGCAAAATCAGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTG 196512 Query 23558 AAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATC 23617 ||||||||| ||||||||| ||| || ||||| ||||| ||||||||| |||||| | Sbjct 196513 AAAATGTTAGTCCTGGCATCAATGATCTCTTTTTTATCCAGAATATTGCACAAAATGAAC 196572 Query 23618 CGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCAT 23677 | |||||||||||||| ||||| || ||||| || | | | | | |||||| ||| Sbjct 196573 CAGAAAAGAAAATACCTTCAACTGCAGCAAAAGCAATTAATCTTTCAGCAAATGAGTCAT 196632 Query 23678 TATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACA-CACTCAATTGTT 23736 | || | |||||||| | | ||| | || ||| || || | || || | | Sbjct 196633 TTTAGTTT---ATCCATTTCATAGCCCACATTGCTTTCTTTTATATAACAGGCACAT-TA 196688 Query 23737 TCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGT 23796 ||||| || | | || || ||||||| | | ||| || ||||| |||||||||| Sbjct 196689 TCAATAGCATGAAGAAGGTAATTTTTTTCATTTTCATCAGTAATATAAGTATCAATTA-- 196746 Query 23797 AAACTA--TACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATC 23854 ||| | || |||| || ||||||||||| || || || | ||| ||||||||||||| Sbjct 196747 AAAGTGAGTAAGTTTCTGAGTGAATATTTTCCATTGCTATTTAAAATCCATAAAAACATC 196806 Query 23855 TAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATAC 23914 | ||||| | | |||||| ||| || | ||| || ||| |||||||| || ||||| | Sbjct 196807 TTGCTTCTGGAACTTGAACTTCAGTACAGAATTATTAAGCCAAATTTTCATTCACAATGC 196866 Query 23915 CATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATA 23974 ||||||| || |||||||||||||| ||||| |||||||| ||| ||||||| | || || Sbjct 196867 CATCACTTGCTGCAAAGAAAGCAAGCACATACTTTATAAAGTGTTTTTCATCTGCTGTTA 196926 Query 23975 ATTTTTTCCAATCATTAATATCTT----TTGAT------------------------AAA 24006 ||||| |||||| || | ||| | || || ||| Sbjct 196927 GTTTTTCCCAATCTTTTAAATCCTAAAATTTATTAATTTACATATAATACCTAATACAAA 196986 Query 24007 TCAACTTCATCAACTGTCCAAAAACTTGC--CAAGGCACGCTTATACATTAGCCAAATAT 24064 || | || ||| |||||||||||||||| | | | |||||||| |||||||| Sbjct 196987 TCTATCTCTTCAGCTGTCCAAAAACTTGCTTTATGTTA--TTTATACATATTCCAAATAT 197044 Query 24065 CATTATGTTGTATTGGAAATATTACGAATCTAT 24097 |||||| || ||| ||||| | ||| ||||||| Sbjct 197045 CATTATATTTTATAGGAAACAATACAAATCTAT 197077 >seq80 Length=351589 Score = 325 bits (360), Expect = 4e-84 Identities = 556/801 (69%), Gaps = 13/801 (2%) Strand=Plus/Minus Query 23201 TATTCATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTAC 23260 || ||||||| || ||||| ||| || || || | ||||||||| |||||||| |||| Sbjct 175326 TACTCATAACTCCAGCTTTTTAATAGTCTCCGACTCTTCTTTCGAAGAAATTTGTTTTAC 175267 Query 23261 CCTCTAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTAC 23320 | | ||| ||||| | ||||| | ||||| ||||| | ||| |||| |||| Sbjct 175266 CTTATAAGGATATCATATCCATCCATTCAAAAGGATTCTTTGAATTGTATAT---TTTAG 175210 Query 23321 ATGAT---AATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAAT 23377 || | || || | |||||||| |||||||| ||||||| ||| |||| Sbjct 175209 GTGCTCCTAAAGAAAATATTAATCTATCTGCAACAAATTCTATATATTATTTCATTAAAT 175150 Query 23378 CATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGG 23437 | | || || || |||| || ||||| | || ||| | ||| ||||||||| Sbjct 175149 TAGAATTCATTCCGATTAATTCAACTGGTAAAGCTTCACTAATAAATTCTTTTTCAATTT 175090 Query 23438 AAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACT 23497 |||||| | ||| |||| | ||| || | ||| | || | | || | Sbjct 175089 CAACAGCTGATGAAATAATTTAATGAATTCGTTGATTACTCAATTTATTAATCATATGTT 175030 Query 23498 TAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAG 23557 || | | | ||| ||||||||| || || |||||||| || || | |||||| | Sbjct 175029 TATATAGGAGACAAGCAAAATCAGTGTGAAGTCCTTCATCTCTTGATATAAGTTCATTTG 174970 Query 23558 AAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATC 23617 |||| || | ||| ||||||||| || |||||| |||||||| || ||| |||||| | Sbjct 174969 AAAAGGTAAGTCCAGGCATTAATGATCTTTTTTTGATCCAAAAAATGGCACAAAATGAAC 174910 Query 23618 CGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCAT 23677 | |||||||| || || |||||||| ||||| || | | | | | |||||| ||| Sbjct 174909 CAGAAAAGAAGATGCCTTCAACAGCAGCAAAAGCGATTAATCTTTCAGCAAATGAATCAT 174850 Query 23678 TATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACA-CACTCA-ATTGT 23735 | |||| | ||||| || ||| ||| | || || || || | || | ||||| Sbjct 174849 TCTAATTA---ATCCACTTCATTGCCCACATTGCTTTTTTTTGTATAACAGGAACATTGT 174793 Query 23736 TTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAG 23795 |||| || | || ||| || ||||||| | | ||| ||||| || || ||||| | Sbjct 174792 --CAATAGCATGTAGAAGATAATTTTTTTCATTTTCATCAGTTATGTAAGTGTCAATCAA 174735 Query 23796 TAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCT 23855 | | ||| |||| ||||| ||||| || ||||| || | || |||||||||||||| Sbjct 174734 AAGAGAATAAGTTTCTGAATGTATATTCTCCATAGCTATTTAGAATCCATAAAAACATCT 174675 Query 23856 AGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACC 23915 ||||| | | |||||| ||| || ||||| | ||||| ||||| || |||||||| Sbjct 174674 GGCTTCTGGAATTTGAACTTCAGTACAAAATTACTAAGCTAGGTTTTCATTTACAATACC 174615 Query 23916 ATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAA 23975 |||||| || |||||||||||||| ||||| |||||||||||| |||| || | | | Sbjct 174614 ATCACTTGCTGCAAAGAAAGCAAGGACATACTTTATAAAATGTTTTTCGTCTGCAGTGAG 174555 Query 23976 TTTTTTCCAATCATTAATATC 23996 |||| |||||| |||| ||| Sbjct 174554 CTTTTCCCAATCTTTAAGATC 174534 >seq142 Length=220426 Score = 96.9 bits (106), Expect = 4e-15 Identities = 135/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 64466 ATAGTTGAATTTTCTGAAAATATGGCCAATAAAGGAAAAATTGTAATTGTTTCAGCGTTA 64525 || || || ||| ||| || ||||| ||| ||||||||||||||||||| |||| || Sbjct 110164 ATTGTCGAGTTTAGTGAGAAGATGGCAAATTTAGGAAAAATTGTAATTGTTGCAGCTCTA 110105 Query 64526 GATGCGACATATAAAAGAGAACCATTTGGTAATATCCTAAATCTAGTTCCATTAGCTGAA 64585 |||| || | | | || |||| ||| ||||||| |||| | |||||||||||||| Sbjct 110104 GATGGAACTTTTGATAGGAAACCTTTTCATAATATCTTAAACTTGATTCCATTAGCTGAA 110045 Query 64586 AAAGTAATAAAATTAAATGCTATATGTAAAATATGTTTCA---AAGATGCTGCATTTACT 64642 | | | | |||| ||| || ||||| | || | || ||||| | |||||| Sbjct 110044 AGAATCACAAAACTAACAGCAGTATGTTGGTTTTGCAAAAGAGAAAATGCTTCCTTTACT 109985 Query 64643 AAAAGATTA 64651 |||||| || Sbjct 109984 AAAAGAATA 109976 >seq131 Length=247357 Score = 82.4 bits (90), Expect = 8e-11 Identities = 132/189 (70%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 64466 ATAGTTGAATTTTCTGAAAATATGGCCAATAAAGGAAAAATTGTAATTGTTTCAGCGTTA 64525 || ||||||||| ||| || ||||| ||| ||| || |||||||| ||| |||| | Sbjct 143607 ATTGTTGAATTTAGTGAGAAAATGGCAAATTTAGGGAAGATTGTAATAGTTGCAGCTCTT 143666 Query 64526 GATGCGACATATAAAAGAGAACCATTTGGTAATATCCTAAATCTAGTTCCATTAGCTGAA 64585 |||| |||| | | || |||| || |||||| ||||| | | || || |||||| Sbjct 143667 GATGGAACATTTGATAGGAAACCTTTCCATAATATTTTAAATTTGATACCGTTGGCTGAA 143726 Query 64586 AAAGTAATAAAATTAAATGCTATATGTAAAATATGTTTCAAAGA---TGCTGCATTTACT 64642 ||| |||||||| || ||||| | ||| | ||| |||| |||||||| Sbjct 143727 CGCATAACAAAATTAACAGCGGTATGTTGGTTTTGTAAAAGAGAAAATGCTTCATTTACT 143786 Query 64643 AAAAGATTA 64651 |||||| || Sbjct 143787 AAAAGAATA 143795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521484460400200