Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq29 122 1e-22 >seq29 Length=558623 Score = 122 bits (134), Expect = 1e-22 Identities = 379/587 (65%), Gaps = 18/587 (3%) Strand=Plus/Plus Query 155871 TTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAATTCCAAC 155930 ||||| |||| || | || |||||| || ||||||| |||||| | || ||| || Sbjct 362900 TTTAATATTTACAGCCTACCAGCTTCATCTGGCAATCCAACTTCTATATGCACTTCAAAT 362959 Query 155931 CGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATT 155990 | || |||||||||| ||||| |||||||| || ||| || |||||||| || | Sbjct 362960 CTACCTGGTCTTAATACAGCTTCATCAATTAAATCTTTTCTATTTGTCATACCAATAACA 363019 Query 155991 AAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGACTACGGCG 156050 | ||| || ||||||| | ||| || ||||| | || ||||||||||| || || Sbjct 363020 AGAATATTATTTAAAGCATTTACTCCATCTATCATTGATAATAATTGATTAACAACATTA 363079 Query 156051 TCGT--GC----------GTGGCGTTATCACCGCGTTTTTTACACAGAGCATCTATTTCA 156098 || | || | | | ||| | | |||||| | ||||| |||||| Sbjct 363080 TCATAAGCTCCAACCCCAGAAGATACAGAACCTCTCTATTTACATATTGCATCCATTTCA 363139 Query 156099 TCGAAGACGATAACGTGTAATCCGCTGGCTAAACC--CAATTTNNNNNNNNNNNNNNNAG 156156 || || || || | |||||| |||| | || || || || Sbjct 363140 TCAAACACTATGATATGTAATTCGCTTTCATCTCCTTTAACTT--CTTAATCTTTTATAG 363197 Query 156157 CCTCTTGAAACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTAATAATT 156216 | |||| ||| ||| ||||| || |||| | ||| || || |||| | |||| || Sbjct 363198 CATCTTCAAATAATTTTCTGATATTCTCTTCTGCTTCTCCAACGAATTTACTAAATATTT 363257 Query 156217 CAGGACCGTTAACTATTTTGACGGGTCGTGATTTAAAAGCTTGAGCGATACAGCGAGCCA 156276 |||| || |||||||| || |||| | ||| ||| || || | | | || | Sbjct 363258 CAGGTCCATTAACTATCTTTGGAGGTCTAGCTTTTAAAACTCTTGCTAATTATCTTGCAA 363317 Query 156277 TTAATGTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTTACAAC 156336 |||| || || || || ||||| || || | | || |||||||| ||||||| || Sbjct 363318 TTAAAGTCTTTCCTGTTCCTGGAGGACCATACAGGAGTAGTCCTTTTACATGTTTAATAC 363377 Query 156337 CTAATTTTTC-AGTTATTTCTACCGGAACTGATCTGGAAGCAAATGCTCTTCGAAAAATG 156395 | |||| || | | | || |||| | ||| || | |||||| |||| ||| || Sbjct 363378 CATATTTCTCTAAAAACTATTATGGGAA-TCTTCTAGATGAAAATGCCCTTCTAAATATA 363436 Query 156396 AGAGAAAATTCTTTATCCAATCCCCCCACACCCATTTCCTCAAAATT 156442 | |||||||| || | ||| || ||||| | || |||||||| Sbjct 363437 TTTGCTAATTCTTTGTCAAGTCCACCTACACCTAATTTTTCAAAATT 363483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667070672227080