Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq613 136 4e-27 >seq613 Length=410769 Score = 136 bits (150), Expect = 4e-27 Identities = 632/1000 (63%), Gaps = 61/1000 (6%) Strand=Plus/Plus Query 16625 TCTTCATCCAATGAAAATGTGTTATCTTGTTTATGA---ACAACACCCATTCTTTGGTAA 16681 ||| |||||| | |||| ||||||| ||| | | ||| || | ||||||| Sbjct 197277 TCTGCATCCATAGTAAATACTTTATCTTATTTTTTGCTCATAACTCCAGCTTTTTGGTAG 197336 Query 16682 TCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAA 16741 || | ||| | | ||||||| || |||||||| || | || ||||| | ||||| | Sbjct 197337 TCTCCAACTCTTCTTTCGAAGAAATTAGTTTTACCTTATAAGGATATCATATCCATCCAT 197396 Query 16742 TCAAAAGGATTAGTAGCTGAAA---ATATTTTAGAGTACCCCAGTTCGGCGATTAATCTA 16798 ||||||||||| | |||| | || |||| |||| | | || |||||| Sbjct 197397 TCAAAAGGATTCTT---TGAATTGTAGATCTTAGGAGCTCCCAATGCAAATATCAATCTA 197453 Query 16799 TCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACC 16858 || || || ||||| ||||||| ||| || | | | |||||||| || || || Sbjct 197454 TCTGCAACGAATTCAATATATTATTTCATCAAATTGGAATTCATTCCAATTAGTTCAACT 197513 Query 16859 GGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCA 16918 || | |||||| | | ||| || || || |||| || ||| || | | Sbjct 197514 GGTAAAGCTTCACTGATGAATTCTTTTTCAATTTCAACAGCAGAAGAAATGATTTCATGA 197573 Query 16919 ACTCGTTC----CTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATC 16974 ||||||| ||| || ||| | | |||||| | | ||||| || || || Sbjct 197574 ACTCGTTGAATACTCA-ACT---TATTAATCATATGTTTGTAAAGAAGACAAGCAAAGTC 197629 Query 16975 GCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTT 17034 ||| | || || ||||| || | ||| || ||||| || | || |||||| Sbjct 197630 TGTATGGAGACCTTCATCTCTTGAAATTAATTCATTTGAAAAGGTGAGTCCTGGCATCAA 197689 Query 17035 TCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGAC 17094 | || ||| || | ||||||||| || || || ||||||||||| || || || || Sbjct 197690 TGATCTTTTTTTGATCCAAAATATAGCACAAAATGAACCAGAAAAGAAGATGCCTTCAAC 197749 Query 17095 GGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTG 17154 | ||||| || || |||| ||| || | | || || ||| |||||||||| Sbjct 197750 AGCAGCAAAGGCAATCAATCTTTCAGCAAATGAA---TCATTATTATTAATCCATTTCAT 197806 Query 17155 CACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAA----ATAATT 17210 ||||| ||||| | | || | || | || ||||| | | ||| || Sbjct 197807 TGCCCACATTGCTTTCTTTTGAATAACAGGCACATTATCAATGGCATGGAGAAGATAGTT 197866 Query 17211 --TCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGA 17268 |||| ||||| | || ||||||| ||||| || | || || |||| || Sbjct 197867 CTTCTCATTTTCAT------CGGTTATATAGGTATCAATCAAAAGTGAATAGGTTTCTGA 197920 Query 17269 GTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAAC 17328 ||| ||||||||||| ||||| | |||||| || ||||||| ||||| | | ||| || Sbjct 197921 GTGAATGTTCTCCATAGCTATTTAAAATCCATAGAAGCATCTTGCTTCAGGAACTTGCAC 197980 Query 17329 TTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAA 17388 ||| |||| || || | ||||| ||||| || || || || || || || || Sbjct 197981 TTCTGTACAGAACTATTGGGCCAAGTTTTCATTCACAATACCATCACTTGCTGCAAAGAA 198040 Query 17389 CGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCT---- 17444 || | || || ||||| || | ||||| || | || || ||| || | Sbjct 198041 GGCAAGTACATATTTAATAAAGTGCTTTTCATCGGCAGTGAGTTTTTCCCAATCTTTAAG 198100 Query 17445 -----------------TTAAAT------CTTTGGATATATCCACTTCTTCGGGGGTCCA 17481 |||||| | | ||| ||| | |||||| | ||||| Sbjct 198101 ATCCTAAAATTTATTAATTAAATAGAATACCTAATATAAATCTATTTCTTCAGCTGTCCA 198160 Query 17482 AAAACTAGCCACTGCCTT-TTTATACATATTCCAAATATCATTGTATTGTATGGGGAATA 17540 ||||| | | || || |||||||||||||| || |||||||||| ||||||||| | Sbjct 198161 GAAACTTG-CTTTGTGTTACTTATACATATTCCAGATGTCATTGTATTTTATGGGGAAGA 198219 Query 17541 CAACATATCTATCTAAGGATTCCTTTAACACGGGCTCGTC 17580 ||| |||||| | | || ||||| | ||||| || Sbjct 198220 GTACAAATCTATTTGGGTTTTGTTTTAAAAGAGGCTCATC 198259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517541090883960