Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq613 233 2e-56 seq697 181 1e-40 >seq613 Length=410769 Score = 233 bits (258), Expect = 2e-56 Identities = 528/789 (67%), Gaps = 25/789 (3%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 ||||||| || | ||| | | |||||||||| |||||||| || | ||| ||||| | | Sbjct 197329 TTTGGTAGTCTCCAACTCTTCTTTCGAAGAAATTAGTTTTACCTTATAAGGATATCATAT 197388 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAA---ATATCTTAGAGTACCCCAGTTCCGTAA 16028 |||| | ||||| ||||| | |||| | ||||||| |||| | | | Sbjct 197389 CCATCCATTCAAAAGGATTCTT---TGAATTGTAGATCTTAGGAGCTCCCAATGCAAATA 197445 Query 16029 CTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAA 16088 ||||||||||| || ||||| ||||||| ||| || | | |||| ||||| || | Sbjct 197446 TCAATCTATCTGCAACGAATTCAATATATTATTTCATCAAATTGGAATTCATTCCAATTA 197505 Query 16089 GTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGA 16148 || || || | ||||| | | |||| || ||| || |||| || ||||| Sbjct 197506 GTTCAACTGGTAAAGCTTCACTGATGAATTCTTTTTCAATTTCAACAGCAGAAGAAATGA 197565 Query 16149 TATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGA 16208 | || ||||| | | ||| | | ||||| | | ||||| || | Sbjct 197566 TTTCATGAACTCGTTGAATACTCAACTTATTAATCATATGTTTGTAAAGAAGACAAGCAA 197625 Query 16209 AGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCA 16268 |||| ||| || ||||| ||||| || | ||| || ||||| || | ||||||| Sbjct 197626 AGTCTGTATGGAGACCTTCATCTCTTGAAATTAATTCATTTGAAAAGGTGAGTCCTGGCA 197685 Query 16269 TTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCT 16328 | | || ||| || | ||| ||||| ||| |||||| || |||||||| || || | Sbjct 197686 TCAATGATCTTTTTTTGATCCAAAATATAGCACAAAATGAACCAGAAAAGAAGATGCCTT 197745 Query 16329 CAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATT 16388 |||||| ||||| || || |||| ||| || | | | ||| |||||| ||||||| Sbjct 197746 CAACAGCAGCAAAGGCAATCAATCTTTCAGCAAATGAATCATTATTATTA---ATCCATT 197802 Query 16389 TCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA-AT 16447 || | |||| ||||| | || ||| | || | || ||||| | | | || Sbjct 197803 TCATTGCCCACATTGCTTTCTTTTGAATAACAGGCACATTATCAATGGCATGGAGAAGAT 197862 Query 16448 -----TTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACA--T 16500 ||||| ||||| |||| ||||||| |||||||||| ||| || | | | Sbjct 197863 AGTTCTTCTCATTTTC------ATCGGTTATATAGGTATCAATCA--AAAGTGAATAGGT 197914 Query 16501 TTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTAT 16560 ||||||||| |||||||| || ||||| | ||||||||||||||||| || || | | Sbjct 197915 TTCTGAGTGAATGTTCTCCATAGCTATTTAAAATCCATAGAAGCATCTTGCTTCAGGAAC 197974 Query 16561 TTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGC 16620 ||| ||||| | || || |||| ||| |||||||| ||||| |||||||| || Sbjct 197975 TTGCACTTCTGTACAGAACTATTGGGCCAAGTTTTCATTCACAATACCATCACTTGCTGC 198034 Query 16621 AAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATC 16680 ||| || || | || | ||||| || | ||||| || | || || | | |||||| Sbjct 198035 AAAGAAGGCAAGTACATATTTAATAAAGTGCTTTTCATCGGCAGTGAGTTTTTCCCAATC 198094 Query 16681 TTTTAAATC 16689 ||| | ||| Sbjct 198095 TTTAAGATC 198103 >seq697 Length=319182 Score = 181 bits (200), Expect = 1e-40 Identities = 513/781 (66%), Gaps = 9/781 (1%) Strand=Plus/Minus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||| || || | || | | |||||||||| || ||||| || | |||||||| | | Sbjct 147638 TTTGATAGTCTCCCACTCTTCTTTCGAAGAAATTGGTTTTACCTTACAAAGATATCATAT 147579 Query 15972 CCATAAAATCAAAGGGATTAGTAGC--TGAAAATATCTTAGAGTACCCCAGTTCCGTAAC 16029 |||| | ||||| ||||| | | || |||| | | ||| |||| | || | Sbjct 147578 CCATCCACTCAAAAGGATTCTTCGAATTGTAAATCT-TGGGAGCACCCAATGCAAATATC 147520 Query 16030 TAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAG 16089 |||||||||||||||||||| ||||||| ||| || | | |||| ||||| ||||| Sbjct 147519 -AATCTATCTGCTACAAATTCAATATATTATTTCATCAAATTGGAATTCATTCCAATAAG 147461 Query 16090 TCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGAT 16149 | || || ||||||| | | |||| || ||| || |||| || | || || Sbjct 147460 TTCAACTGGTAGAGCTTCACTAATGAATTCTTTTTCAATTTCAACAGCCGATGATATTAT 147401 Query 16150 ATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAA 16209 || || | | | | | ||| || || || ||| ||||| || || Sbjct 147400 TTCATGAATTCTTTGATTACTCATTTTATTAACTAAATGCTTGTACAGGAGACAAGCAAA 147341 Query 16210 GTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCAT 16269 ||| ||| || ||||| || || || | ||| || || || || | || ||||| Sbjct 147340 GTCTGTATGGAGACCTTCATCCCTTGAAATTAATTCATTTGAGAAGGTGAGTCCAGGCAT 147281 Query 16270 TTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTC 16329 | || ||| || | ||| ||||| ||| |||||| || |||||||| || || || Sbjct 147280 CAATGATCTTTTTTTGATCCAAAATATGGCACAAAATGAACCAGAAAAGAAGATGCCTTC 147221 Query 16330 AACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTT 16389 ||||| ||||| || || |||| || || | | | ||| | ||| |||||||| Sbjct 147220 AACAGCAGCAAAGGCAATCAATCTCTCAGCAAATGAATCATTCTCATT---TATCCATTT 147164 Query 16390 CTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT-TAAACAATT 16448 | |||| || || | || ||| | || | || || || | || | || Sbjct 147163 CATAGCCCACATTGCCTTCTTTTGAATAACAGGCACATTGTCAATTGCATGTAGAAGATA 147104 Query 16449 TCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGT 16508 || ||||| | |||| |||| || || || |||| | | || ||||||| | Sbjct 147103 GTTC-TTTTCATTTTCATCGGTTATGTAAGTGTCTATCAAAAGAGAATAAGTTTCTGAAT 147045 Query 16509 GTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTT 16568 |||| || || || ||||| | ||||||||| ||||||| || || | | || |||| Sbjct 147044 GTATATTTTCCATTGCTATTTAAAATCCATAAAAGCATCTGGCTTCAGGCACTTAAACTT 146985 Query 16569 CCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACG 16628 | | || || |||| ||| |||||||| ||||| ||||| || |||||||| | Sbjct 146984 CTGTACAGAACTATTAGGCCAAGTTTTCATTCACAATACCATCACTGGCTGCAAAAAAGG 146925 Query 16629 CCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAAT 16688 | | | | |||||| |||| ||||| |||| |||||| | | ||||||||| | || Sbjct 146924 CTAGGACATACTTAATAAAATGCTTTTCATCAGCTGTAAGCTTTTCCCAATCTTTAAGAT 146865 Query 16689 C 16689 | Sbjct 146864 C 146864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511409944302040