Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq99 96.9 3e-15 seq71 87.8 1e-12 >seq99 Length=47800 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||||||||| | |||||||| || || |||||||| || || ||||| | Sbjct 7175 AATGCAAATATTTGTAAAAACATTAACTGGAAAAACCATCACTCTTGATGTTGAACCATC 7234 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || | ||||| |||||| ||||| ||||| | || ||| | Sbjct 7235 AGACACTATTGACGCTGTCAAGGCTAAAATTTAAGATAAGGAAGGAATCCCACCTGATTA 7294 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 | ||||||| || ||||| || || |||| |||||| | ||| | | ||||| || Sbjct 7295 ATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGATTATAA 7354 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||||| ||||| ||| | || || |||| |||| || Sbjct 7355 CATCTAAAAGGAATCCACTCTCCACTTAGTTTTGAGATTGAGAGGTGG 7402 >seq71 Length=215326 Score = 87.8 bits (96), Expect = 1e-12 Identities = 168/245 (69%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 25019 AAGTAATAGTG-TAAA-AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACC 25076 |||||||| | |||| |||| |||| ||| | || ||| | || || ||||| || || Sbjct 119915 AAGTAATATTAATAAACAATGTAAATTTTCGTAAAGACACTCACAGGAAAAACAATCACT 119856 Query 25077 GCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAA 25136 || ||||| | || || | | | | ||||| ||||| || || ||| Sbjct 119855 CTTGATGTTGAACCATCTGACACAATTGATGCTGTCAAGGCTAAAATCCAAGACAAGGAA 119796 Query 25137 GGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAA 25196 || | || ||| |||||||||||||||| || || ||| |||| ||||| | | Sbjct 119795 GGAATCCCACCCGATTAACAAAGACTTATCTTCGCTGGTAAATAATTAGAAGACGGAAGA 119736 Query 25197 ACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGA 25256 || | | || || || ||| |||||||||| ||||||||| | || ||| |||| || Sbjct 119735 ACACTTTCAGACTATAACATTTAAAAGGAATCCACTCTTCACTTAGTCTTAAGATTGAGA 119676 Query 25257 GGAGG 25261 ||||| Sbjct 119675 GGAGG 119671 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||| |||| ||| |||| ||| | || || ||||| || || || ||||| | Sbjct 118984 AATGTAAATCTTCGTCAAGACACTTACAGGAAAAACAATCACTCTTGATGTTGAACCATC 118925 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | | ||| ||||| ||||| ||||| | || ||| | Sbjct 118924 TGACACTATTGATGCTGTTAAGGCTAAAATCTAAGATAAGGAAGGAATCCCACCCGATTA 118865 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||||||||||||| || || || |||| ||||| | ||| | | || || || Sbjct 118864 ACAAAGACTTATCTTCGCTGGAAAGTAATTAGAAGACGGAAGAACACTTTCAGACTATAA 118805 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGGTA 25264 ||| |||||||||| || |||||| |||| ||| |||| ||||||| || Sbjct 118804 CATTTAAAAGGAATCCACACTTCACTTGGTTTTAAGATTGAGAGGAGGCTA 118754 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||| |||| ||| |||| ||| | || || ||||| || || || ||||| | Sbjct 119212 AATGTAAATCTTCGTCAAGACACTTACAGGAAAAACAATCACTCTTGATGTTGAACCATC 119153 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | | ||| ||||| ||||| ||||| | || ||| | Sbjct 119152 TGACACTATTGATGCTGTTAAGGCTAAAATCTAAGATAAGGAAGGAATCCCACCCGATTA 119093 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 | ||||||||||||| || || ||| |||| ||||| | ||| | | || || || Sbjct 119092 ATAAAGACTTATCTTCGCTGGTAAATAATTAGAAGACGGAAGAACACTTTCAGACTATAA 119033 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| |||||||||| || |||||| |||| ||| |||| ||||||| Sbjct 119032 CATTTAAAAGGAATCAACCCTTCACTTGGTCTTAAGATTGAGAGGAGG 118985 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||| |||| ||| |||| ||| | || || || || || || || ||||| | Sbjct 119440 AATGTAAATCTTCGTCAAGACACTCACAGGAAAGACTATCACTCTTGATGTTGAACCATC 119381 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | ||||| ||||| || || ||||| | ||| ||| | Sbjct 119380 TGACACAATTGATGCTGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCCCCTGATTA 119321 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 | |||||||||||||||| || || |||| |||||| | ||| | | || || || Sbjct 119320 ATAAAGACTTATCTTTGCTGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGACTATAA 119261 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| |||||||||| || |||||| |||| || |||| ||||||| Sbjct 119260 CATTTAAAAGGAATCAACCCTTCACTTGGTCTTGAGATTGAGAGGAGG 119213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410793310409558