Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq180 122 2e-22 >seq180 Length=553472 Score = 122 bits (134), Expect = 2e-22 Identities = 182/258 (71%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 135619 ACGTGGaaaaaaaTACCCGATCCTGTTTTGCATATAGAACTTAGGAGATGGGCGGATGTT 135678 || |||||| ||| ||||| || || ||||| ||| | | | |||||| || | Sbjct 268741 ACATGGAAATAAAGGAATGATCCAGTATTACATATTGAATTGCGAAAATGGGCAGACTGT 268682 Query 135679 TTTATTATAGCGCCCTTAACGGCAAATACGTTAGCAAAAATAGCTAATGGTATATGCGAT 135738 || | ||||| || || | || ||||| | || || ||||||||||| |||| ||| Sbjct 268681 TTACTGATAGCTCCTCTATCAGCCAATACTATGGCTAAGATAGCTAATGGCTTATGTGAT 268622 Query 135739 AATTTACTGACGTCTATTGTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCT 135798 |||||| | || | ||| ||||| |||||| || ||||| | ||||| |||| Sbjct 268621 AATTTATTAACAAATGTTGCCAGAGCATGGGATTACAAGAAACCTATGATTTTAGCTCCT 268562 Query 135799 GCAATGAATACTCTTATGTGGGAACATCCTATTACAGAAAAACATATAGATACGTTAAAA 135858 |||||||||||| | |||| || |||| || ||||||||||| || ||| ||||| Sbjct 268561 GCAATGAATACTATGATGTATGAGAATCCAATCACAGAAAAACAAATCAATAAACTAAAA 268502 Query 135859 TATATGGGT---TTCATA 135873 | || ||| |||||| Sbjct 268501 AAGATCGGTGCCTTCATA 268484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923188756647880