Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq697 336 2e-87 seq613 329 3e-85 >seq697 Length=319182 Score = 336 bits (372), Expect = 2e-87 Identities = 593/851 (70%), Gaps = 15/851 (2%) Strand=Plus/Minus Query 15868 TATCAATAATAATTAACTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATT 15927 ||||| | ||||||| | | || || ||| | || ||| || ||||||| ||| || Sbjct 147713 TATCAGTGCTAATTAA--TCAGAAGTCTGCATCCATAGTAAATACTTTATCTTATTTTTT 147656 Query 15928 TGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCC 15987 ||| ||| ||||||||| || | ||||| |||| |||||||| ||||| || Sbjct 147655 ACTCATGACTCCAGCTTTTTGATAGTCTCCCACTCTTCTTTCGAAGAAATTGGTTTTACC 147596 Query 15988 TTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAG-TATTTATCGC 16046 || || || || | ||||| | ||||||||||| || ||| || | || || Sbjct 147595 TTACAAAGATATCATATCCATCCACTCAAAAGGATTCTTCGAATTGTAAATCTTGGGAGC 147536 Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106 | |||||| | || | |||||||| || |||||||| ||||| | |||||| |||| Sbjct 147535 A-CCCAATGCAAATATCAATCTATCTGCTACAAATTCAATATATTATTTCATCAAATTGG 147477 Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAA 16166 | |||||||| || | || ||| || | ||||| | | || | |||||| || | || Sbjct 147476 AATTCATTCCAATAAGTTCAACTGGTAGAGCTTCACTAATGAATTCTTTTTCAATTTCAA 147417 Query 16167 CCGCTTCAATGATTATATCTCTT-ACTACACTATTTAACGGAGGGT-TTAA-TAAGTGTT 16223 | || | ||||| ||| || | | | | | ||| | | | |||| ||| || | Sbjct 147416 CAGC--CGATGATATTATTTCATGAATTCTTTGATTA-CTCATTTTATTAACTAAATGCT 147360 Query 16224 TAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTG 16283 | ||| | ||||||||| || ||| | ||||| ||||| ||||| || |||| Sbjct 147359 TGTACAGGAGACAAGCAAAGTCTGTATGGAGACCTTCATCCCTTGAAATTAATTCATTTG 147300 Query 16284 AAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAAC 16343 | || || || || ||||| | | || |||||| ||||||||||| || |||||||| Sbjct 147299 AGAAGGTGAGTCCAGGCATCAATGATCTTTTTTTGATCCAAAATATGGCACAAAATGAAC 147240 Query 16344 CAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAt 16403 |||||||||| || |||||||| || ||||| |||| ||||| |||| | | | || Sbjct 147239 CAGAAAAGAAGATGCCTTCAACAGCAGCAAAGGCAATCAATCTCTCAGCAAATGAATCAT 147180 Query 16404 ttttactttctatccattttttagcccaatttgctttttgtttAACA-CAGTTCATGTTC 16462 | | | || |||||||| ||||||| |||| || | || || | ||| || || Sbjct 147179 TCTCATTT---ATCCATTTCATAGCCCACATTGCCTTCTTTTGAATAACAGG-CACATTG 147124 Query 16463 TCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGT 16522 || ||||||| | | ||| || ||||| || ||| || ||||| ||||| | Sbjct 147123 TCAATTGCATGTAGAAGATAGTTCTTTTCATTTTCATCGGTTATGTAAGTGTCTATCAAA 147064 Query 16523 AAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTA 16582 | | ||| |||||||||| ||||| ||||||||||| | ||| |||||||||||||| Sbjct 147063 AGAGAATAAGTTTCTGAATGTATATTTTCCATTGCTATTTAAAATCCATAAAAGCATCTG 147004 Query 16583 GCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCA 16642 ||||| | | || ||||| | | ||| || || |||||||| || || || ||| Sbjct 147003 GCTTCAGGCACTTAAACTTCTGTACAGAACTATTAGGCCAAGTTTTCATTCACAATACCA 146944 Query 16643 TCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGT 16702 || || ||||||||||| || || | | |||||||||| ||||| | | ||| ||| Sbjct 146943 TCACTGGCTGCAAAAAAGGCTAGGACATACTTAATAAAATGCTTTTCATCAGCTGTAAGC 146884 Query 16703 TTTAACCAGTC 16713 ||| ||| || Sbjct 146883 TTTTCCCAATC 146873 >seq613 Length=410769 Score = 329 bits (364), Expect = 3e-85 Identities = 557/799 (70%), Gaps = 17/799 (2%) Strand=Plus/Plus Query 15898 ATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACT 15957 ||| | || ||| || ||||||| ||| || ||||||| |||||| || || | Sbjct 197282 ATCCATAGTAAATACTTTATCTTATTTTTTGCTCATAACTCCAGCTTTTTGGTAGTCTCC 197341 Query 15958 AACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAA 16017 |||||| |||| |||||||| ||||| |||| ||| || || | ||||| | ||||| Sbjct 197342 AACTCTTCTTTCGAAGAAATTAGTTTTACCTTATAAGGATATCATATCCATCCATTCAAA 197401 Query 16018 AGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCAC 16077 |||||| |||||| ||| ||| ||||||| | || | |||||||| || || Sbjct 197402 AGGATTCTTTGAATTGTAGATCTTAGGAGCTCCCAATGCAAATATCAATCTATCTGCAAC 197461 Query 16078 AAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGC 16137 ||||| ||||| | |||||| |||| | |||||||| |||| || ||| || | || Sbjct 197462 GAATTCAATATATTATTTCATCAAATTGGAATTCATTCCAATTAGTTCAACTGGTAAAGC 197521 Query 16138 TTCTGTTAAAAAAtttttttCTATATTAACCGCTTCA---ATGATTATATCTCTTACTAC 16194 ||| | | || | |||||| || | ||| || | |||||| || | | Sbjct 197522 TTCACTGATGAATTCTTTTTCAATTTCAACAGCAGAAGAAATGATTTCATGAACTCGTTG 197581 Query 16195 ACTATTTAACGGAGGGTTTAATAAG-TGTTTAAACATTATACAAGCAAAATCACAATGCA 16253 | || | ||| | ||||| | ||||| | | | ||||||||| || ||| | Sbjct 197582 AATACTCAACTTA----TTAATCATATGTTTGTAAAGAAGACAAGCAAAGTCTGTATGGA 197637 Query 16254 ATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTT 16313 ||||| || || ||||| || |||||||| || || |||||||| | | || || Sbjct 197638 GACCTTCATCTCTTGAAATTAATTCATTTGAAAAGGTGAGTCCTGGCATCAATGATCTTT 197697 Query 16314 TTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAA 16373 |||| |||||||||||||| |||||||||||||||||| || |||||||| || |||| Sbjct 197698 TTTTGATCCAAAATATAGCACAAAATGAACCAGAAAAGAAGATGCCTTCAACAGCAGCAA 197757 Query 16374 ATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaat 16433 | |||| ||||| ||| | | | || ||| | | |||||||| | ||||| Sbjct 197758 AGGCAATCAATCTTTCAGCAAA---TGAATCATTATTATTAATCCATTTCATTGCCCACA 197814 Query 16434 ttgctttttgtttAA-CACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCT 16492 ||||||| | || || |||| || || || || |||| | | ||| || || || Sbjct 197815 TTGCTTTCTTTTGAATAACAG-GCACATTATCAATGGCATGGAGAAGATAGTTCTTCTCA 197873 Query 16493 TTGCTATCTAAAATATAAGTATCTATTAGTAAACT--ATACATTTCTGAATGAATATTCT 16550 || ||| ||||| ||||| || | ||| | ||| ||||||| ||||| |||| Sbjct 197874 TTTTCATCGGTTATATAGGTATCAATCA--AAAGTGAATAGGTTTCTGAGTGAATGTTCT 197931 Query 16551 CCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAA 16610 |||| ||||| | ||| ||||| |||||||| ||||| | | ||| ||||| | | | Sbjct 197932 CCATAGCTATTTAAAATCCATAGAAGCATCTTGCTTCAGGAACTTGCACTTCTGTACAGA 197991 Query 16611 ACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGT 16670 || || || |||||||| || || || ||||| || |||||||| || ||||||| | Sbjct 197992 ACTATTGGGCCAAGTTTTCATTCACAATACCATCACTTGCTGCAAAGAAGGCAAGTACAT 198051 Query 16671 GTTTAATAAAAtttttttC 16689 ||||||||| | ||||| Sbjct 198052 ATTTAATAAAGTGCTTTTC 198070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462507970364200