Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq613 298 5e-76 seq697 248 8e-61 >seq613 Length=410769 Score = 298 bits (330), Expect = 5e-76 Identities = 573/836 (69%), Gaps = 23/836 (3%) Strand=Plus/Plus Query 13857 AAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13916 |||| || |||| | | ||| || ||||| | ||| || ||||| || ||||| Sbjct 197272 AAAAGTCTGCATCCATAGTAAATACTTTATCTTATTTTTTGCTCATAACTCCAGCTTTTT 197331 Query 13917 GATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13976 | || || | ||||||| |||| ||||| ||||||||||||| | ||||| | |||| Sbjct 197332 GGTAGTCTCCAACTCTTCTTTCGAAGAAATTAGTTTTACCTTATAAGGATATCATATCCA 197391 Query 13977 TAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATC 14036 | | ||||| ||||| |||| | | | ||| | || | | | |||| |||| Sbjct 197392 TCCATTCAAAAGGATTCTTTGAATTGTAGATCTTAGGAGCTCCCAATGCAAATATCAATC 197451 Query 14037 TATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 14096 |||| |||| ||| |||||||||| ||| |||| ||||||| || ||||||| | Sbjct 197452 TATCTGCAACGAATTCAATATATTATTTCATCAAATTGGAATTCATTCCAATTAGTTCAA 197511 Query 14097 CAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCG 14156 | || | | | | ||||||||||| || ||||| | | ||| || Sbjct 197512 CTGGTAAAGCTTCACTGATGAATTCTTTTTCAATTTCAACAGCA--GAAGA-AATGATT- 197567 Query 14157 TAATAATTTCATT--AGAAGGAGGATATT--TTAGATGTTTAAAAATTAAACACGCAAAA 14212 | || | || || | | | |||| | | |||||| ||| | ||| ||||| Sbjct 197568 TCATGAACTCGTTGAATACTCAACTTATTAATCATATGTTTGTAAAGAAGACAAGCAAAG 197627 Query 14213 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 14272 || ||| || || |||||||| ||| | ||| |||||||| || | |||||||||| Sbjct 197628 TCTGTATGGAGACCTTCATCTCTTGAAATTAATTCATTTGAAAAGGTGAGTCCTGGCATC 197687 Query 14273 AATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCA 14332 ||| || |||||| | ||||||||| ||| ||||| || |||||||| || || ||| Sbjct 197688 AATGATCTTTTTTTGATCCAAAATATAGCACAAAATGAACCAGAAAAGAAGATGCCTTCA 197747 Query 14333 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTT 14392 || |||||||| || || |||| ||| |||| || | || || || |||||||| Sbjct 197748 ACAGCAGCAAAGGCAATCAATCTTTCAGCAAATGAATCATTATTATT---AATCCATTTC 197804 Query 14393 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGT 14452 | ||||| | ||| |||| ||||| | || | ||||| |||| | | || Sbjct 197805 ATTGCCCACATTGCTTTCTTTTGAATAACAGGCACATTATCAATGGCATGGAGAAGATAG 197864 Query 14453 TCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT---AAGTAAGCTATACATTTCAGAG 14509 | |||||| || | | || || |||||||| |||| | ||| |||| ||| Sbjct 197865 TTCTTCTCATTTTCATCGGTTATATAGGTATCAATCAAAAGTGA---ATAGGTTTCTGAG 197921 Query 14510 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACC 14569 || ||||| ||||||||||| | ||| ||||| || ||||| ||||| | ||| || Sbjct 197922 TGAATGTTCTCCATAGCTATTTAAAATCCATAGAAGCATCTTGCTTCAGGAACTTGCACT 197981 Query 14570 TCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAAT 14629 |||| | || || |||||| |||||||| || ||||||||||| |||||||| || Sbjct 197982 TCTGTACAGAACTATTGGGCCAAGTTTTCATTCACAATACCATCACTTGCTGCAAAGAAG 198041 Query 14630 GCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---CTGAGTTTTTTCCAATC 14682 || | || | |||||||||| |||| ||||| | ||||||||| |||||| Sbjct 198042 GCAAGTACATATTTAATAAAG---TGCTTTTCATCGGCAGTGAGTTTTTCCCAATC 198094 >seq697 Length=319182 Score = 248 bits (274), Expect = 8e-61 Identities = 551/815 (68%), Gaps = 19/815 (2%) Strand=Plus/Minus Query 13876 AAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTT 13935 ||| || ||||| | ||| ||| || || || ||||||||| || | |||||| | Sbjct 147676 AAATACTTTATCTTATTTTTTACTCATGACTCCAGCTTTTTGATAGTCTCCCACTCTTCT 147617 Query 13936 TTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGT 13995 ||| ||||| || |||||||||| || ||||| | ||||| | ||||| ||||| | Sbjct 147616 TTCGAAGAAATTGGTTTTACCTTACAAAGATATCATATCCATCCACTCAAAAGGATTCTT 147557 Query 13996 TGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAAT 14055 || | | | || | ||| | | | |||| |||||||| || | || ||||| Sbjct 147556 CGAATTGTAAATCTTGGGAGCACCCAATGCAAATATCAATCTATCTGCTACAAATTCAAT 147497 Query 14056 ATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAA 14115 ||||| ||| |||| ||||||| || || |||| || || | | || ||| Sbjct 147496 ATATTATTTCATCAAATTGGAATTCATTCCAATAAGTTCAACTGGTAG-AGCTTCACTAA 147438 Query 14116 A-AATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT-CGT-AATAATTTCATTAGA 14172 ||||||||||| || |||||| | | ||| || | | | ||| ||| |||| Sbjct 147437 TGAATTCTTTTTCAATTTCAACAGCC--GATGATATTATTTCATGAATTCTTTGATTACT 147380 Query 14173 AGGAGGATATTT--TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCA 14230 | |||| || ||| || | | | ||| ||||| || ||| || || ||| Sbjct 147379 C--ATTTTATTAACTAAATGCTTGTACAGGAGACAAGCAAAGTCTGTATGGAGACCTTCA 147322 Query 14231 TCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAAC 14290 || || ||| | ||| ||||| || || | ||| ||||||||| || |||||| | | Sbjct 147321 TCCCTTGAAATTAATTCATTTGAGAAGGTGAGTCCAGGCATCAATGATCTTTTTTTGATC 147262 Query 14291 CAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATT 14350 |||||||| ||| ||||| || |||||||| || || ||||| |||||||| || || Sbjct 147261 CAAAATATGGCACAAAATGAACCAGAAAAGAAGATGCCTTCAACAGCAGCAAAGGCAATC 147202 Query 14351 AATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttt 14410 |||| || |||| || | || | || ||||||||| ||||||| | || Sbjct 147201 AATCTCTCAGCAAATGAATCATTCTCATT---TATCCATTTCATAGCCCACATTGCCTTC 147145 Query 14411 tttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTT 14470 |||| ||||| | || | ||||| |||| | | || | ||| || || | Sbjct 147144 TTTTGAATAACAGGCACATTGTCAATTGCATGTAGAAGATAGTTCTTTTCATTTTCATCG 147085 Query 14471 GAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATC 14530 | ||||| || || || | | ||| |||| || ||||| |||||||| ||||| Sbjct 147084 GTTATGTAAGTGTCTATCAAAAGAGAATAAGTTTCTGAATGTATATTTTCCATTGCTATT 147025 Query 14531 TGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCC 14590 | ||| |||||||| ||||| ||||| | | || || |||| | || || |||| Sbjct 147024 TAAAATCCATAAAAGCATCTGGCTTCAGGCACTTAAACTTCTGTACAGAACTATTAGGCC 146965 Query 14591 AAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAG 14650 || |||||||| || ||||||||||| ||||||||||| || | | | ||||||| Sbjct 146964 AAGTTTTCATTCACAATACCATCACTGGCTGCAAAAAAGGCTAGGACATACTTAATAA-- 146907 Query 14651 TATTGCTCTTCAT-TGCTG--AGTTTTTTCCAATC 14682 | |||| ||||| |||| || |||| |||||| Sbjct 146906 -AATGCTTTTCATCAGCTGTAAGCTTTTCCCAATC 146873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482341397563960