Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq99 95.1 9e-15 seq71 95.1 9e-15 seq247 82.4 6e-11 >seq99 Length=47800 Score = 95.1 bits (104), Expect = 9e-15 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 ||| || || ||||| |||| ||||| || || | | |||| | | |||||| |||| Sbjct 7379 GTGGAGAGTGGATTCCTTTTAGATGTTATAATCTGAAAGTGTTCTTCCATCTTCTAATTA 7320 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 || || ||| | || ||||||| || ||| || | ||||||||||| ||||| Sbjct 7319 CTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTATCTTAAATTTT 7260 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 |||||| ||| |||||| || || |||| |||||| |||| || || Sbjct 7259 AGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTGATGGTTTTTCCAGT 7200 Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326 |||||||||||||| ||||||||| Sbjct 7199 TAATGTTTTTACAAATATTTGCATT 7175 >seq71 Length=215326 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 18095 TTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTC 18154 ||| ||||| | | ||| | |||| ||||||||| ||||| |||| |||||| ||||| Sbjct 118753 TTAGCCTCCTCTCAATCTTAAAACCAAGTGAAGTGTGGATTCCTTTTAAATGTTATAGTC 118812 Query 18155 GGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCAC 18214 | | |||| | | ||||| |||| || || || ||||||||||||||| ||| Sbjct 118813 TGAAAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCGAAGATAAGTCTTTGTTAATCGGG 118872 Query 18215 GGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC 18274 || | ||||||||||| |||| ||| || ||| ||||||| || || Sbjct 118873 TGGGATTCCTTCCTTATCTTAGATTTTAGCCTTAACAGCATCAATAGTGTCAGATGGTTC 118932 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| ||||| |||| || || | ||| || || || |||| |||| Sbjct 118933 AACATCAAGAGTGATTGTTTTTCCTGTAAGTGTCTTGACGAAGATTTACATT 118984 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | | ||| | || | |||||| || ||||| |||| |||||| ||||| | Sbjct 119670 TCCTCCTCTCAATCTTAAGACTAAGTGAAGAGTGGATTCCTTTTAAATGTTATAGTCTGA 119729 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | |||| | | ||||| |||| ||| || || ||||||||||||||| ||| || Sbjct 119730 AAGTGTTCTTCCGTCTTCTAATTATTTACCAGCGAAGATAAGTCTTTGTTAATCGGGTGG 119789 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || |||| |||||| ||| |||||| || || Sbjct 119790 GATTCCTTCCTTGTCTTGGATTTTAGCCTTGACAGCATCAATTGTGTCAGATGGTTCAAC 119849 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 |||| ||||| |||| || || | ||| ||||| ||||||| |||| || Sbjct 119850 ATCAAGAGTGATTGTTTTTCCTGTGAGTGTCTTTACGAAAATTTACATTGTT 119901 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | | ||| | |||| |||||| |||||||| |||| |||||| ||||| | Sbjct 118984 TCCTCCTCTCAATCTTAAGACCAAGTGAAGGGTTGATTCCTTTTAAATGTTATAGTCTGA 119043 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | |||| | | ||||| |||| ||| || || |||||||||||| || ||| || Sbjct 119044 AAGTGTTCTTCCGTCTTCTAATTATTTACCAGCGAAGATAAGTCTTTATTAATCGGGTGG 119103 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| |||| ||| || ||| ||||||| || || Sbjct 119104 GATTCCTTCCTTATCTTAGATTTTAGCCTTAACAGCATCAATAGTGTCAGATGGTTCAAC 119163 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| ||||| |||| || || | ||| || || || |||| |||| Sbjct 119164 ATCAAGAGTGATTGTTTTTCCTGTAAGTGTCTTGACGAAGATTTACATT 119212 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | | ||| | |||| |||||| |||||||| |||| |||||| ||||| | Sbjct 119212 TCCTCCTCTCAATCTCAAGACCAAGTGAAGGGTTGATTCCTTTTAAATGTTATAGTCTGA 119271 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | |||| | | |||||| |||| || || ||| |||||||||||| || ||| ||| Sbjct 119272 AAGTGTTCTTCCATCTTCTAATTACTTTCCAGCAAAGATAAGTCTTTATTAATCAGGGGG 119331 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || |||| |||||| ||| |||||| || || Sbjct 119332 GATTCCTTCCTTGTCTTGGATTTTAGCCTTGACAGCATCAATTGTGTCAGATGGTTCAAC 119391 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| ||||| | || || || | ||| || || || |||| |||| Sbjct 119392 ATCAAGAGTGATAGTCTTTCCTGTGAGTGTCTTGACGAAGATTTACATT 119440 >seq247 Length=527326 Score = 82.4 bits (90), Expect = 6e-11 Identities = 167/248 (67%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | ||||| | ||||| || || |||||||| ||||| ||||| || || | Sbjct 406069 CCTCCTCTGAGTCTCAATACCAAATGGAGAGTTGATTCCTTTTGGATGTTATAATCTGAA 406010 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | |||||||||||| || || || | || | ||||| |||||| || Sbjct 406009 AGAGTTCTTCCATCTTCCAATTGCTTTCCAGCGAAAATTAATCTTTATTGATCGGGAGGG 405950 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || || | | ||| || | | ||||||| ||||| Sbjct 405949 ATTCCTTCCTTGTCCTAGATCTTTGCCTTAACAGCATCGATAGTGTCAGATGGCTCAACA 405890 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT----TTTTAAACT 18334 || | |||||| | || || || | || || |||||||||| ||| ||||||| | Sbjct 405889 TCGAGTGTGATGGTCTTACCCGTGAGGGTCTTAACAAAAATTTACATATTATTTTAAATT 405830 Query 18335 CTTATAAA 18342 ||| ||| Sbjct 405829 TTTAAAAA 405822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379340777591265