Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq697 158 1e-33 seq613 136 4e-27 seq247 118 9e-22 seq71 109 5e-19 seq502 82.4 7e-11 seq386 82.4 7e-11 seq114 82.4 7e-11 >seq697 Length=319182 Score = 158 bits (174), Expect = 1e-33 Identities = 657/1018 (65%), Gaps = 79/1018 (8%) Strand=Plus/Plus Query 57506 CGATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCC 57565 |||||| ||||||||| || | || || ||||||||| | || || || |||| Sbjct 146706 CGATGAGCCACTTTTGAAACAAAACCCAAATAGATTTGTACTCTTCCCCATAAAATACAA 146765 Query 57566 AGACATTTGGAACATGTACAAA-AAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAG 57624 ||||||||||||||||| ||| || || ||||| || ||||| | ||||| ||| Sbjct 146766 TGACATTTGGAACATGTATAAATAACACA-AAGCAAGTTTCTGGACAGCAGAAGAGATAG 146824 Query 57625 ACCTGTCTAAGG------ATCTGAGCGAT-------TGGGATTCCCTCAAAGAAT----- 57666 | | | | ||| || |||| || | |||| || ||||| | Sbjct 146825 ATTTATATTAGGTACTCTATTTGAGTAATAAAATTTTAGGAT---CTTAAAGATTGGGAA 146881 Query 57667 ----------CTGA-GAGAA--ATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCC 57713 |||| || || |||||||||| | || | || ||||| || || Sbjct 146882 AAGCTTACAGCTGATGAAAAGCATTTTATTAAGTATGTCCTAGCCTTTTTTGCAGCCAGT 146941 Query 57714 GATGGTATTGTTAACGAGAATTTGGTCGAA-AGATTTTCACAAGAAGTGCAAGTGACGGA 57772 ||||||||||| || || || |||| | || || | | || |||||| ||||| | || Sbjct 146942 GATGGTATTGTGAATGAAAACTTGGCCTAATAGTTCTGTAC-AGAAGTTTAAGTGCCTGA 147000 Query 57773 GGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTC 57832 || ||||||||||| |||||| || | || || ||||| | |||||||||| ||||| Sbjct 147001 AGCCAGATGCTTTTATGGATTTTAAATAGCAATGGAAAATATACATTCAGAAACTTATTC 147060 Query 57833 GCTACTCATCGATACGTACGTGA---AGGACAACGACGAGAAACGTAGACTGTTCAAC-- 57887 || | || || || ||| | | | || || || |||| || | ||| || Sbjct 147061 TCTTTTGATAGACACTTACATAACCGATGAAAATGAAAAGAA--CTA---TCTTCTACAT 147115 Query 57888 GCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA 57947 || || || | |||| | || ||||||||| |||| | || ||||||||||| Sbjct 147116 GCAATTGACAATGTGCCTGTTATTCAAAAGAAGGCAATGTGGGCTATGAAATGGATAAA- 147174 Query 57948 AGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTC 58007 | | | | || || ||||| | || || || || || || ||||| || ||| Sbjct 147175 --TGAGAATGATTCATTTGCTGAGAGATTGATTGCCTTTGCTGCTGTTGAAGGCATCTTC 147232 Query 58008 TTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTG 58067 ||||| || ||| || ||||||||||| || ||| | ||||||| || || Sbjct 147233 TTTTCTGGTTCATTTTGTGCCATATTTTGGATCAAAAAAAGATCATTGATGCCTGGACTC 147292 Query 58068 ACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTA 58127 || || || || || || || | || || ||||||||||| || ||||| || || Sbjct 147293 ACCTTCTCAAATGAATTAATTTCAAGGGATGAAGGTCTCCATACAGACTTTGCTTGTCTC 147352 Query 58128 ATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCA----TCTTG-GACATTATCA 58182 ||||| || | || |||||| | | | ||| | || || | | ||||| Sbjct 147353 CTGTACAAGCATTTAGTTAATAAA---ATGAGTAATCAAAGAATTCATGAAATAATATCA 147409 Query 58183 CCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCG 58242 | ||| || | || ||||| || || | | ||||| ||||| || | | | | Sbjct 147410 TC--GGCTGTTGAAATTGAAAAAGAATTCATTAGTGAAGCTCTACCAGTTGAACTTATTG 147467 Query 58243 GTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCG 58302 | ||||| |||||||| | | || ||||| ||||| || || ||| ||| | Sbjct 147468 GAATGAATTCCAATTTGATGAAATAATATATTGAATTTGTAGCAGATAGA---TTGAT-- 147522 Query 58303 AACTG-ATTGGAGAGCGTC-----ATTACAACACGAAAAATCCGTTTGATTTTATGAATC 58356 | || ||||| | || | |||||| |||| ||||| ||||| | ||| || Sbjct 147523 ATTTGCATTGG-GTGCTCCCAAGATTTACAATTCGAAGAATCCTTTTGAGTGGATGGATA 147581 Query 58357 TGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAAT 58416 |||| || | | || || || || || ||||||| || ||| | || ||||||||| Sbjct 147582 TGATATCTTTGTAAGGTAAAACCAATTTCTTCGAAAGAAGAGTGGGAGACTATCAAAAAG 147641 Query 58417 ACGGCGTGATGAGCGGTAACAAGTTGGAGGACGATATTTTCACTTTGGATGCTGCCTT 58474 || || |||| |||| || | || | | ||||| ||| ||||||| | ||| Sbjct 147642 CTGGAGTCATGA---GTAAAAAATAAGATAAAG-TATTT--ACTATGGATGCAGACTT 147693 >seq613 Length=410769 Score = 136 bits (150), Expect = 4e-27 Identities = 525/810 (65%), Gaps = 25/810 (3%) Strand=Plus/Minus Query 57678 TTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTG 57737 ||||||||| | || | || || || || ||| ||||||||||| || || || ||| Sbjct 198061 TTTATTAAATATGTACTTGCCTTCTTTGCAGCAAGTGATGGTATTGTGAATGAAAACTTG 198002 Query 57738 GTCGAA-AGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 | | || || | | ||| ||||||||||| | || || |||||||| || |||||| | Sbjct 198001 GCCCAATAGTTCTGTACA-GAAGTGCAAGTTCCTGAAGCAAGATGCTTCTATGGATTTTA 197943 Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856 | | || || || ||| | || ||||||| ||||| || | || ||||| || | | Sbjct 197942 AATAGCTATGGAGAACATTCACTCAGAAACCTATTCACTTTTGATTGATACCTATATAAC 197883 Query 57857 GGACAACGACGAGAA-ACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCA 57915 || | | ||||| | || || || | || || || | |||| | || | Sbjct 197882 CGATGAAAATGAGAAGAACTA-TCTTCTCCATGCCATTGATAATGTGCCTGTTATTCAAA 197824 Query 57916 AGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGC 57975 |||| ||| |||| |||| |||||||| || | | | | || || || || Sbjct 197823 AGAAAGCAATGTGGGCAATGAAATGGATTAATA---ATAATGATTCATTTGCTGAAAGAT 197767 Query 57976 TAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTT 58035 | || || || || || || ||||| || |||||||| || ||| || ||||||| Sbjct 197766 TGATTGCCTTTGCTGCTGTTGAAGGCATCTTCTTTTCTGGTTCATTTTGTGCTATATTTT 197707 Query 58036 GGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCG 58095 |||| || ||| | ||||||| || || || ||| || || || || || | | Sbjct 197706 GGATCAAAAAAAGATCATTGATGCCAGGACTCACCTTTTCAAATGAATTAATTTCAAGAG 197647 Query 58096 ACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGA 58155 | || ||||||||||| || ||||| || || | ||| || || | ||||| || Sbjct 197646 ATGAAGGTCTCCATACAGACTTTGCTTGTCTTCTTTACAAACATATGATTAATAAGTTGA 197587 Query 58156 CGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCA 58215 | || | || || || | || || | || ||||| || || ||| Sbjct 197586 GTATTCAACGAGTTCATGAAATCATTTCTTCTGCTGTTGAAATTGAAAAAGAATTCATCA 197527 Query 58216 CCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTG 58275 ||||| |||| || | | | || ||||| |||||||| | | || |||| Sbjct 197526 GTGAAGCTTTACCAGTTGAACTAATTGGAATGAATTCCAATTTGATGAAATAATATATTG 197467 Query 58276 AGTTTGTTGCCGACAGACTTTTGCTCGAACTG-ATTGGAGAGCGTC----AT-TACAACA 58329 | || ||||| || ||| ||| | | || ||||| |||| | || ||||| Sbjct 197466 AATTCGTTGCAGATAGA---TTGAT--ATTTGCATTGG-GAGCTCCTAAGATCTACAATT 197413 Query 58330 CGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCG 58389 | || ||||| ||||| | ||| || |||| || | | || || || || || |||| Sbjct 197412 CAAAGAATCCTTTTGAATGGATGGATATGATATCCTTATAAGGTAAAACTAATTTCTTCG 197353 Query 58390 aaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTAACAAGTTGGAGGACG 58449 ||| || |||| | || || |||||| || || |||||| || || | || | | Sbjct 197352 AAAGAAGAGTTGGAGACTACCAAAAAGCTGGAGTTATGAGC---AAAAAATAAGATAAAG 197296 Query 58450 ATATTTTCACTTTGGATGCTGCCTTTTAAT 58479 ||||| ||| ||||||| | ||||| || Sbjct 197295 -TATTT--ACTATGGATGCAGACTTTTGAT 197269 >seq247 Length=527326 Score = 118 bits (130), Expect = 9e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||| ||||||| || ||||| || || || || || ||||| |||| ||||| || Sbjct 405840 AATATGTAAATTTTTGTTAAGACCCTCACGGGTAAGACCATCACACTCGATGTTGAGCCA 405899 Query 31250 TCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| | |||| | || || || ||| | |||||||||||| | || ||||| Sbjct 405900 TCTGACACTATCGATGCTGTTAAGGCAAAGA-TCTAGGACAAGGAAGGAATCCCTCCCGA 405958 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || | | |||| |||||||| || || |||||||| | ||| | ||||| Sbjct 405959 TCAATAAAGATTAATTTTCGCTGGAAAGCAATTGGAAGATGGAAGAACTCTTTCAGATTA 406018 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||| ||||| ||||| ||||| ||| ||||| | ||||| || || ||| Sbjct 406019 TAACATCCAAAAGGAATCAACTCTCCATTTGGTATTGAGACTCAGAGGAGGT 406070 >seq71 Length=215326 Score = 109 bits (120), Expect = 5e-19 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 31189 AAACA-TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||||| || |||||||||||||||| || ||||| ||||| ||||| | || ||||||| Sbjct 119902 AAACAATGTAAATTTTCGTAAAGACACTCACAGGAAAAACAATCACTCTTGATGTTGAAC 119843 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || |||| | || | ||||| | ||| ||||||||||| | || |||| Sbjct 119842 CATCTGACACAATTGATGCTGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCACCCG 119783 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 | | || | || || |||||||| ||| | || |||||| | || | || | Sbjct 119782 ATTAACAAAGACTTATCTTCGCTGGTAAATAATTAGAAGACGGAAGAACACTTTCAGACT 119723 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| |||| ||||| |||||||| | || | ||| |||| || || Sbjct 119722 ATAACATTTAAAAGGAATCCACTCTTCACTTAGTCTTAAGATTGAGAGGAGG 119671 >seq502 Length=458689 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||| ||||||||||||||||| |||| || ||||| ||||| | || |||||||| || Sbjct 101086 ATGTAAATTTTCGTAAAGACTTTGACTGGAAAAACCATCACTCTTGATGTTGAACCATCA 101145 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | ||| ||||||||||| | || || || | Sbjct 101146 GACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 101205 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG---ACTATGAGCGATTAT 31369 | | || || || || || || | || ||||| | | | ||| | | |||||| Sbjct 101206 TAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGA-TGGAAGAACACTTTCA--GATTAT 101262 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| |||| ||||| ||||| || | || | ||| |||| || || Sbjct 101263 AACATCTAAAAGGAATCCACTCTCCACTTAGTTTTGAGATTGAGAGGTGG 101312 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||| ||||||||||||||||| |||| || ||||| ||||| | || |||||||| || Sbjct 102688 ATGTAAATTTTCGTAAAGACTTTGACTGGAAAAACCATCACTCTTGATGTTGAACCATCA 102747 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | ||| ||||||||||| | || || || | Sbjct 102748 GACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 102807 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG---ACTATGAGCGATTAT 31369 | | || || || || || || | || ||||| | | | ||| | | |||||| Sbjct 102808 TAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGA-TGGAAGAACACTTTCA--GATTAT 102864 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| |||| ||||| ||||| || | || | ||| |||| || || Sbjct 102865 AACATCTAAAAGGAATCCACTCTCCACTTAGTTTTGAGATTGAGAGGTGG 102914 >seq386 Length=4266 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||| ||||||||||||||||| |||| || ||||| ||||| | || |||||||| || Sbjct 175 ATGTAAATTTTCGTAAAGACTTTGACTGGAAAAACCATCACTCTTGATGTTGAACCATCA 234 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | ||| ||||||||||| | || || || | Sbjct 235 GACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 294 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG---ACTATGAGCGATTAT 31369 | | || || || || || || | || ||||| | | | ||| | | |||||| Sbjct 295 TAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGA-TGGAAGAACACTTTCA--GATTAT 351 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| |||| ||||| ||||| || | || | ||| |||| || || Sbjct 352 AACATCTAAAAGGAATCCACTCTCCACTTAGTTTTGAGATTGAGAGGTGG 401 >seq114 Length=584889 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||| ||||||| || ||||| || || ||||| || ||||| |||| || || || Sbjct 475321 AATATGTAAATTTTTGTTAAGACCCTCACGGGCAAGACCATCACACTCGATGTCGAGCCA 475380 Query 31250 TCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || || | | |||| | || || || ||| | ||||| ||||| | || ||||| Sbjct 475381 TCTGATACTATCGATGCTGTTAAGGCAAAGA-TCTAAGACAAAGAAGGAATCCCTCCCGA 475439 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 | | | | || || ||||| || || ||||| || | ||| | |||||| Sbjct 475440 TTAATAAAGATTGATTTTTGCTGGAAAGCAATTGGAGGATGGAAGAACTCTTTCCGATTA 475499 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||| |||| ||||| ||||| ||| | ||| | ||||| || || ||| Sbjct 475500 TAACATCTAAAAGGAATCAACTCTCCATTTAGTATTGAGACTCAGAGGAGGT 475551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762516260240