Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq697 145 2e-29 seq613 118 2e-21 >seq697 Length=319182 Score = 145 bits (160), Expect = 2e-29 Identities = 230/324 (71%), Gaps = 12/324 (4%) Strand=Plus/Plus Query 101915 ATTG-TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTT 101973 |||| ||||||||||||| |||||||| ||||||||| |||| |||| |||| || Sbjct 147199 ATTGATTGCCTTTGCTGCTGTTGAAGGCATCTTCTTTTCTGGTTCATTTTGTGCCATATT 147258 Query 101974 CTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAG 102033 |||||||| || || | ||||||| ||||||| ||| ||||| || ||||| || Sbjct 147259 TTGGATCAAAAAAAGATCATTGATGCCTGGACTCACCTTCTCAAATGAATTAATTTCAAG 147318 Query 102034 GGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATAC 102093 ||| |||||||| ||| |||||||| || | |||| | ||| ||| ||| ||| Sbjct 147319 GGATGAAGGTCTCCATACAGACTTTGCTTGTCTCCTGT---ACAAGCATTTAGTTAATA- 147374 Query 102094 CCCATCA--AGAGAAAGGATTCTTGAAAT--TGTCACTGAAGCCGTCCGAATTGAACAAG 102149 || | | |||| |||| |||||| | ||| | || || ||||||| ||| Sbjct 147375 -AAATGAGTAATCAAAGAATTCATGAAATAATATCATCG--GCTGTTGAAATTGAAAAAG 147431 Query 102150 AATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCC 102209 |||| | | | | || || ||| || | | |||||||| | ||| ||||||| Sbjct 147432 AATTCATTAGTGAAGCTCTACCAGTTGAACTTATTGGAATGAATTCCAATTTGATGAAAT 147491 Query 102210 AGTACATTGAATTTGTGGCAGATA 102233 | || ||||||||||| ||||||| Sbjct 147492 AATATATTGAATTTGTAGCAGATA 147515 >seq613 Length=410769 Score = 118 bits (130), Expect = 2e-21 Identities = 437/671 (65%), Gaps = 33/671 (5%) Strand=Plus/Minus Query 101578 GGATCCTAAAGATTGGGAGAAACTCACTCAAGATGAGAAGGATTTCATTCTCCAGATTCT 101637 ||||| |||||||||||| ||||||||| ||||| ||| | || ||| | | || Sbjct 198104 GGATCTTAAAGATTGGGAAAAACTCACTGCCGATGAAAAGCACTTTATTAAATATGTACT 198045 Query 101638 GGCGTTCTTTGCATCCTCTGACGGAATTGTAATTGAAAATCTTA---CAACACGTCTTCG 101694 || ||||||||| | ||| || ||||| | |||||| ||| ||| | ||| | Sbjct 198044 TGCCTTCTTTGCAGCAAGTGATGGTATTGTGAATGAAAA-CTTGGCCCAATAGTTCT--G 197988 Query 101695 TCAAGTGGCGCAGATTCCAGAAGCGAGGAGTTTCTTTGACTTCCAAGTTGGAATGGAGAG 101754 | || | ||| |||| ||||| || | |||| || || || | | ||||||| Sbjct 197987 TACAGAAGTGCAAGTTCCTGAAGCAAGATGCTTCTATGGATTTTAAATAGCTATGGAGAA 197928 Query 101755 TATTCATG--GCAACGTCTACGGAGAACTGATTGATAGACTGGTGCCCGACGAAAAAGAC 101812 ||||| | ||| | | | | ||||||||| | |||| ||||| || Sbjct 197927 CATTCACTCAGAAACCTATTC--ACTTTTGATTGATACCTATATAACCGATGAAAATGAG 197870 Query 101813 AAGG-CTATCTTGTTTAACGCTGCACA---ACACT-TCCCCGCCATCAAGAAGAAGGAGC 101867 ||| ||||||| | | ||| || | | | | || | || | ||||| ||| Sbjct 197869 AAGAACTATCTTCTCCA----TGC-CATTGATAATGTGCCTGTTATTCAAAAGAA--AGC 197817 Query 101868 A--GTGGGCTATTAATTGGATGCAAAGCAATAACGATT---TGGCGGAACTAATTGTTGC 101922 | |||||| || || ||||| | | |||| |||| | || ||| | | |||| Sbjct 197816 AATGTGGGCAATGAAATGGATTAATA---ATAATGATTCATTTGCTGAAAGATTGATTGC 197760 Query 101923 CTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATCAA 101982 ||||||||| |||||||| ||||||||| |||| |||| | || || |||||||| Sbjct 197759 CTTTGCTGCTGTTGAAGGCATCTTCTTTTCTGGTTCATTTTGTGCTATATTTTGGATCAA 197700 Query 101983 GAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAAGG 102042 || || | |||| || ||||||| || ||||| || ||||| || || ||||| Sbjct 197699 AAAAAGATCATTGATGCCAGGACTCACCTTTTCAAATGAATTAATTTCAAGAGATGAAGG 197640 Query 102043 TCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCATCAAG 102102 ||| ||| |||||||| || | || | ||| | | | || ||| | Sbjct 197639 TCTCCATACAGACTTTGCTTGTCTTCTTTACAAACA---TATGATTAATAAGTTGAGTAT 197583 Query 102103 AGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCACAGT 102162 || | ||| |||||| | || || || ||||||| ||||||| ||| | Sbjct 197582 TCAACGAGTTCATGAAATCATTTCTTCTGCTGTTGAAATTGAAAAAGAATTCATCAGTGA 197523 Query 102163 TTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTGAATT 102222 | | || ||| || || | |||||||| | ||| ||||||| | || |||||||| Sbjct 197522 AGCTTTACCAGTTGAACTAATTGGAATGAATTCCAATTTGATGAAATAATATATTGAATT 197463 Query 102223 TGTGGCAGATA 102233 || ||||||| Sbjct 197462 CGTTGCAGATA 197452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989575162705635